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Duncan MacCannell
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Emergence of SARS-CoV-2 b. 1.1. 7 lineage—united states, december 29, 2020–january 12, 2021
SE Galloway
MMWR. Morbidity and mortality weekly report 70, 2021
8052021
Epidemiology of community-associated Clostridium difficile infection, 2009 through 2011
AS Chitnis, SM Holzbauer, RM Belflower, LG Winston, WM Bamberg, ...
JAMA internal medicine 173 (14), 1359-1367, 2013
5492013
New Delhi metallo-β-lactamase–producing carbapenem-resistant Escherichia coli associated with exposure to duodenoscopes
L Epstein, JC Hunter, MA Arwady, V Tsai, L Stein, M Gribogiannis, M Frias, ...
Jama 312 (14), 1447-1455, 2014
4902014
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission
S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ...
Nature 609 (7925), 101-108, 2022
3342022
Cryptic transmission of SARS-CoV-2 in Washington state
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
Science 370 (6516), 571-575, 2020
3072020
Emergence and rapid transmission of SARS-CoV-2 B. 1.1. 7 in the United States
NL Washington, K Gangavarapu, M Zeller, A Bolze, ET Cirulli, ...
Cell 184 (10), 2587-2594. e7, 2021
2862021
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California
X Deng, W Gu, S Federman, L Du Plessis, OG Pybus, NR Faria, C Wang, ...
Science 369 (6503), 582-587, 2020
2762020
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse
F Konings, MD Perkins, JH Kuhn, MJ Pallen, EJ Alm, BN Archer, ...
Nature microbiology 6 (7), 821-823, 2021
2702021
Pathogen genomics in public health
GL Armstrong, DR MacCannell, J Taylor, HA Carleton, EB Neuhaus, ...
New England Journal of Medicine 381 (26), 2569-2580, 2019
2392019
Molecular Analysis of Clostridium difficile PCR Ribotype 027 Isolates from Eastern and Western Canada
DR MacCannell, TJ Louie, DB Gregson, M Laverdiere, AC Labbe, F Laing, ...
Journal of clinical microbiology 44 (6), 2147-2152, 2006
2382006
Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic
JR Bowers, B Kitchel, EM Driebe, DR MacCannell, C Roe, D Lemmer, ...
PloS one 10 (7), e0133727, 2015
2362015
Development and validation of an internationally-standardized, high-resolution capillary gel-based electrophoresis PCR-ribotyping protocol for Clostridium difficile
WN Fawley, CW Knetsch, DR MacCannell, C Harmanus, T Du, ...
PloS one 10 (2), e0118150, 2015
2312015
Strengthening the Reporting of Molecular Epidemiology for Infectious Diseases (STROME-ID): an extension of the STROBE statement
N Field, T Cohen, MJ Struelens, D Palm, B Cookson, JR Glynn, V Gallo, ...
The Lancet infectious diseases 14 (4), 341-352, 2014
2192014
Clostridium difficile Infections in a Canadian Tertiary Care Hospital before and during a Regional Epidemic Associated with the BI/NAP1/027 Strain
AC Labbé, L Poirier, D MacCannell, T Louie, M Savoie, C Béliveau, ...
Antimicrobial agents and chemotherapy 52 (9), 3180-3187, 2008
2012008
Next-generation sequencing of infectious pathogens
M Gwinn, D MacCannell, GL Armstrong
Jama 321 (9), 893-894, 2019
1822019
Genomic surveillance for SARS-CoV-2 variants: predominance of the Delta (B. 1.617. 2) and Omicron (B. 1.1. 529) variants—United States, June 2021–January 2022
AS Lambrou
MMWR. Morbidity and mortality weekly report 71, 2022
1792022
Good laboratory practice for clinical next-generation sequencing informatics pipelines
AS Gargis, L Kalman, DP Bick, C Da Silva, DP Dimmock, BH Funke, ...
Nature biotechnology 33 (7), 689-693, 2015
1712015
Early introductions and transmission of SARS-CoV-2 variant B. 1.1. 7 in the United States
T Alpert, AF Brito, E Lasek-Nesselquist, J Rothman, AL Valesano, ...
Cell 184 (10), 2595-2604. e13, 2021
1392021
Proton pump inhibitors increase significantly the risk of Clostridium difficile infection in a low‐endemicity, non‐outbreak hospital setting
BR Dalton, T Lye‐Maccannell, EA Henderson, DR Maccannell, TJ Louie
Alimentary pharmacology & therapeutics 29 (6), 626-634, 2009
1262009
Want to track pandemic variants faster? Fix the bioinformatics bottleneck
EB Hodcroft, N De Maio, R Lanfear, DR MacCannell, BQ Minh, ...
Nature 591 (7848), 30-33, 2021
1072021
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