Emergence of SARS-CoV-2 b. 1.1. 7 lineage—united states, december 29, 2020–january 12, 2021 SE Galloway MMWR. Morbidity and mortality weekly report 70, 2021 | 805 | 2021 |
Epidemiology of community-associated Clostridium difficile infection, 2009 through 2011 AS Chitnis, SM Holzbauer, RM Belflower, LG Winston, WM Bamberg, ... JAMA internal medicine 173 (14), 1359-1367, 2013 | 549 | 2013 |
New Delhi metallo-β-lactamase–producing carbapenem-resistant Escherichia coli associated with exposure to duodenoscopes L Epstein, JC Hunter, MA Arwady, V Tsai, L Stein, M Gribogiannis, M Frias, ... Jama 312 (14), 1447-1455, 2014 | 490 | 2014 |
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ... Nature 609 (7925), 101-108, 2022 | 334 | 2022 |
Cryptic transmission of SARS-CoV-2 in Washington state T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ... Science 370 (6516), 571-575, 2020 | 307 | 2020 |
Emergence and rapid transmission of SARS-CoV-2 B. 1.1. 7 in the United States NL Washington, K Gangavarapu, M Zeller, A Bolze, ET Cirulli, ... Cell 184 (10), 2587-2594. e7, 2021 | 286 | 2021 |
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California X Deng, W Gu, S Federman, L Du Plessis, OG Pybus, NR Faria, C Wang, ... Science 369 (6503), 582-587, 2020 | 276 | 2020 |
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse F Konings, MD Perkins, JH Kuhn, MJ Pallen, EJ Alm, BN Archer, ... Nature microbiology 6 (7), 821-823, 2021 | 270 | 2021 |
Pathogen genomics in public health GL Armstrong, DR MacCannell, J Taylor, HA Carleton, EB Neuhaus, ... New England Journal of Medicine 381 (26), 2569-2580, 2019 | 239 | 2019 |
Molecular Analysis of Clostridium difficile PCR Ribotype 027 Isolates from Eastern and Western Canada DR MacCannell, TJ Louie, DB Gregson, M Laverdiere, AC Labbe, F Laing, ... Journal of clinical microbiology 44 (6), 2147-2152, 2006 | 238 | 2006 |
Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic JR Bowers, B Kitchel, EM Driebe, DR MacCannell, C Roe, D Lemmer, ... PloS one 10 (7), e0133727, 2015 | 236 | 2015 |
Development and validation of an internationally-standardized, high-resolution capillary gel-based electrophoresis PCR-ribotyping protocol for Clostridium difficile WN Fawley, CW Knetsch, DR MacCannell, C Harmanus, T Du, ... PloS one 10 (2), e0118150, 2015 | 231 | 2015 |
Strengthening the Reporting of Molecular Epidemiology for Infectious Diseases (STROME-ID): an extension of the STROBE statement N Field, T Cohen, MJ Struelens, D Palm, B Cookson, JR Glynn, V Gallo, ... The Lancet infectious diseases 14 (4), 341-352, 2014 | 219 | 2014 |
Clostridium difficile Infections in a Canadian Tertiary Care Hospital before and during a Regional Epidemic Associated with the BI/NAP1/027 Strain AC Labbé, L Poirier, D MacCannell, T Louie, M Savoie, C Béliveau, ... Antimicrobial agents and chemotherapy 52 (9), 3180-3187, 2008 | 201 | 2008 |
Next-generation sequencing of infectious pathogens M Gwinn, D MacCannell, GL Armstrong Jama 321 (9), 893-894, 2019 | 182 | 2019 |
Genomic surveillance for SARS-CoV-2 variants: predominance of the Delta (B. 1.617. 2) and Omicron (B. 1.1. 529) variants—United States, June 2021–January 2022 AS Lambrou MMWR. Morbidity and mortality weekly report 71, 2022 | 179 | 2022 |
Good laboratory practice for clinical next-generation sequencing informatics pipelines AS Gargis, L Kalman, DP Bick, C Da Silva, DP Dimmock, BH Funke, ... Nature biotechnology 33 (7), 689-693, 2015 | 171 | 2015 |
Early introductions and transmission of SARS-CoV-2 variant B. 1.1. 7 in the United States T Alpert, AF Brito, E Lasek-Nesselquist, J Rothman, AL Valesano, ... Cell 184 (10), 2595-2604. e13, 2021 | 139 | 2021 |
Proton pump inhibitors increase significantly the risk of Clostridium difficile infection in a low‐endemicity, non‐outbreak hospital setting BR Dalton, T Lye‐Maccannell, EA Henderson, DR Maccannell, TJ Louie Alimentary pharmacology & therapeutics 29 (6), 626-634, 2009 | 126 | 2009 |
Want to track pandemic variants faster? Fix the bioinformatics bottleneck EB Hodcroft, N De Maio, R Lanfear, DR MacCannell, BQ Minh, ... Nature 591 (7848), 30-33, 2021 | 107 | 2021 |