SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data E Kopylova, L Noé, H Touzet Bioinformatics 28 (24), 3211-3217, 2012 | 2380 | 2012 |
Efficient and accurate P-value computation for Position Weight Matrices H Touzet, JS Varré Algorithms for Molecular Biology 2, 1-12, 2007 | 159 | 2007 |
Algorithms with polynomial interpretation termination proof G Bonfante, A Cichon, JY Marion, H Touzet Journal of Functional Programming 11 (1), 33-53, 2001 | 113 | 2001 |
CARNAC: folding families of related RNAs H Touzet, O Perriquet Nucleic acids research 32 (suppl_2), W142-W145, 2004 | 100 | 2004 |
Analysis of tree edit distance algorithms S Dulucq, H Touzet Combinatorial Pattern Matching, 83-95, 2003 | 95 | 2003 |
Finding the common structure shared by two homologous RNAs O Perriquet, H Touzet, M Dauchet Bioinformatics 19 (1), 108-116, 2003 | 93 | 2003 |
Assessment of common and emerging bioinformatics pipelines for targeted metagenomics L Siegwald, H Touzet, Y Lemoine, D Hot, C Audebert, S Caboche PLoS One 12 (1), e0169563, 2017 | 92 | 2017 |
Predicting transcription factor binding sites using local over-representation and comparative genomics M Defrance, H Touzet BMC bioinformatics 7, 1-11, 2006 | 81 | 2006 |
Alignments of RNA structures G Blin, A Denise, S Dulucq, C Herrbach, H Touzet Computational Biology and Bioinformatics, IEEE/ACM Transactions on 7 (2 …, 2010 | 60 | 2010 |
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes P Pericard, Y Dufresne, L Couderc, S Blanquart, H Touzet Bioinformatics 34 (4), 585-591, 2018 | 51 | 2018 |
Proteomic characterisation of leech microglia extracellular vesicles (EVs): comparison between differential ultracentrifugation and Optiprep™ density gradient isolation T Arab, A Raffo-Romero, C Van Camp, Q Lemaire, F Le Marrec-Croq, ... Journal of extracellular vesicles 8 (1), 1603048, 2019 | 43 | 2019 |
A linear tree edit distance algorithm for similar ordered trees H Touzet Combinatorial Pattern Matching, 334-345, 2005 | 42 | 2005 |
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data L Lima, C Marchet, S Caboche, C Da Silva, B Istace, JM Aury, H Touzet, ... Briefings in bioinformatics 21 (4), 1164-1181, 2020 | 41 | 2020 |
A complete protocol for whole-genome sequencing of virus from clinical samples: Application to coronavirus OC43 F Maurier, D Beury, L Fléchon, JS Varré, H Touzet, A Goffard, D Hot, ... Virology 531, 141-148, 2019 | 41 | 2019 |
Decomposition algorithms for the tree edit distance problem S Dulucq, H Touzet Journal of Discrete Algorithms 3 (2-4), 448-471, 2005 | 39 | 2005 |
RNAspace. org: An integrated environment for the prediction, annotation, and analysis of ncRNA MJ Cros, A de Monte, J Mariette, P Bardou, B Grenier-Boley, D Gautheret, ... Rna 17 (11), 1947-1956, 2011 | 38 | 2011 |
TFM-Explorer: mining cis-regulatory regions in genomes L Tonon, H Touzet, JS Varrï¿ ½ Nucleic acids research 38 (suppl_2), W286-W292, 2010 | 38 | 2010 |
How to compare arc-annotated sequences: The alignment hierarchy G Blin, H Touzet String Processing and Information Retrieval, 291-303, 2006 | 38 | 2006 |
Encoding the Hydra battle as a rewrite system H Touzet Mathematical Foundations of Computer Science 1998, 267-276, 1998 | 36 | 1998 |
Complexity classes and rewrite systems with polynomial interpretation G Bonfante, A Cichon, J Marion, H Touzet Computer Science Logic, 372-384, 1999 | 31 | 1999 |