| Unicycler: resolving bacterial genome assemblies from short and long sequencing reads RR Wick, LM Judd, CL Gorrie, KE Holt PLoS computational biology 13 (6), e1005595, 2017 | 5105 | 2017 |
| Performance of neural network basecalling tools for Oxford Nanopore sequencing RR Wick, LM Judd, KE Holt Genome biology 20, 1-10, 2019 | 975 | 2019 |
| Completing bacterial genome assemblies with multiplex MinION sequencing RR Wick, LM Judd, CL Gorrie, KE Holt Microbial genomics 3 (10), 2017 | 647 | 2017 |
| Hyperactivation of Stat3 in gp130 mutant mice promotes gastric hyperproliferation and desensitizes TGF-β signaling BJ Jenkins, D Grail, T Nheu, M Najdovska, B Wang, P Waring, M Inglese, ... Nature medicine 11 (8), 845-852, 2005 | 350 | 2005 |
| Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations MMC Lam, RR Wick, KL Wyres, CL Gorrie, LM Judd, AWJ Jenney, ... Microbial genomics 4 (9), 2018 | 286 | 2018 |
| Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae KL Wyres, RR Wick, LM Judd, R Froumine, A Tokolyi, CL Gorrie, ... PLoS genetics 15 (4), e1008114, 2019 | 248 | 2019 |
| Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination MMC Lam, KL Wyres, S Duchêne, RR Wick, LM Judd, YH Gan, CH Hoh, ... Nature communications 9 (1), 2703, 2018 | 226 | 2018 |
| Inactivation of IL11 signaling causes craniosynostosis, delayed tooth eruption, and supernumerary teeth P Nieminen, NV Morgan, AL Fenwick, S Parmanen, L Veistinen, ... The American Journal of Human Genetics 89 (1), 67-81, 2011 | 209 | 2011 |
| Impaired renal NaCl absorption in mice lacking the ROMK potassium channel, a model for type II Bartter's syndrome JN Lorenz, NR Baird, LM Judd, WT Noonan, A Andringa, T Doetschman, ... Journal of Biological Chemistry 277 (40), 37871-37880, 2002 | 199 | 2002 |
| Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from South and Southeast Asia KL Wyres, TNT Nguyen, MMC Lam, LM Judd, N van Vinh Chau, ... Genome medicine 12, 1-16, 2020 | 197 | 2020 |
| Gastric cancer development in mice lacking the SHP2 binding site on the IL-6 family co-receptor gp130 LM Judd, BM Alderman, M Howlett, A Shulkes, C Dow, J Moverley, D Grail, ... Gastroenterology 126 (1), 196-207, 2004 | 188 | 2004 |
| Trycycler: consensus long-read assemblies for bacterial genomes RR Wick, LM Judd, LT Cerdeira, J Hawkey, G Méric, B Vezina, KL Wyres, ... Genome biology 22, 1-17, 2021 | 181 | 2021 |
| Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks RR Wick, LM Judd, KE Holt PLoS computational biology 14 (11), e1006583, 2018 | 175 | 2018 |
| Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae MMC Lam, KL Wyres, LM Judd, RR Wick, A Jenney, S Brisse, KE Holt Genome medicine 10, 1-15, 2018 | 168 | 2018 |
| Helicobacter pylori infection promotes methylation and silencing of trefoil factor 2, leading to gastric tumor development in mice and humans AJ Peterson, TR Menheniott, L O'Connor, AK Walduck, JG Fox, ... Gastroenterology 139 (6), 2005-2017, 2010 | 166 | 2010 |
| Airway microbiota dynamics uncover a critical window for interplay of pathogenic bacteria and allergy in childhood respiratory disease SM Teo, HHF Tang, D Mok, LM Judd, SC Watts, K Pham, BJ Holt, M Kusel, ... Cell host & microbe 24 (3), 341-352. e5, 2018 | 162 | 2018 |
| Mice with a targeted disruption of the AE2 Cl−/HCO 3− exchanger are achlorhydric LR Gawenis, C Ledoussal, LM Judd, V Prasad, SL Alper, A Stuart-Tilley, ... Journal of Biological Chemistry 279 (29), 30531-30539, 2004 | 162 | 2004 |
| Gastric H+, K+-adenosine triphosphatase β subunit is required for normal function, development, and membrane structure of mouse parietal cells KL Scarff, LM Judd, BH Toh, PA Gleeson, IR van Driel Gastroenterology 117 (3), 605-618, 1999 | 162 | 1999 |
| Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307 KL Wyres, J Hawkey, MAK Hetland, A Fostervold, RR Wick, LM Judd, ... Journal of Antimicrobial Chemotherapy 74 (3), 577-581, 2019 | 153 | 2019 |
| STAT3 activation regulates growth, inflammation, and vascularization in a mouse model of gastric tumorigenesis LM Judd, K Bredin, A Kalantzis, BJ Jenkins, M Ernst, AS Giraud Gastroenterology 131 (4), 1073-1085, 2006 | 151 | 2006 |
