| Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ... Nature genetics 47 (6), 632-639, 2015 | 451 | 2015 |
| Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study KS Baker, TJ Dallman, PM Ashton, M Day, G Hughes, PD Crook, ... The Lancet infectious diseases 15 (8), 913-921, 2015 | 246 | 2015 |
| The Rising Dominance of Shigella sonnei: An Intercontinental Shift in the Etiology of Bacillary Dysentery CN Thompson, PT Duy, S Baker PLoS neglected tropical diseases 9 (6), e0003708, 2015 | 179 | 2015 |
| Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid KE Holt, MD Phan, S Baker, PT Duy, TVT Nga, S Nair, AK Turner, C Walsh, ... PLoS neglected tropical diseases 5 (7), e1245, 2011 | 151 | 2011 |
| Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture HMB Seth-Smith, SR Harris, RJ Skilton, FM Radebe, D Golparian, ... Genome research 23 (5), 855-866, 2013 | 144 | 2013 |
| Tracking the establishment of local endemic populations of an emergent enteric pathogen KE Holt, TV Thieu Nga, DP Thanh, H Vinh, DW Kim, MP Vu Tra, ... Proceedings of the National Academy of Sciences 110 (43), 17522-17527, 2013 | 143 | 2013 |
| Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission S Baker, KE Holt, ACA Clements, A Karkey, A Arjyal, MF Boni, S Dongol, ... Open biology 1 (2), 110008, 2011 | 138 | 2011 |
| A changing picture of shigellosis in southern Vietnam: shifting species dominance, antimicrobial susceptibility and clinical presentation H Vinh, NTK Nhu, TVT Nga, PT Duy, JI Campbell, NVM Hoang, MF Boni, ... BMC infectious diseases 9 (1), 1-12, 2009 | 136 | 2009 |
| Fitness benefits in fluoroquinolone-resistant Salmonella Typhi in the absence of antimicrobial pressure S Baker, PT Duy, TVT Nga, TTN Dung, VV Phat, TT Chau, AK Turner, ... Elife 2, e01229, 2013 | 135 | 2013 |
| The genomic signatures of Shigella evolution, adaptation and geographical spread HC The, DP Thanh, KE Holt, NR Thomson, S Baker Nature Reviews Microbiology 14 (4), 235-250, 2016 | 127 | 2016 |
| A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure D Pham Thanh, A Karkey, S Dongol, N Ho Thi, CN Thompson, MA Rabaa, ... Elife 5, e14003, 2016 | 123 | 2016 |
| Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri TR Connor, CR Barker, KS Baker, FX Weill, KA Talukder, AM Smith, ... elife 4, e07335, 2015 | 123 | 2015 |
| The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa SE Park, DT Pham, C Boinett, VK Wong, GD Pak, U Panzner, ... Nature communications 9 (1), 5094, 2018 | 101 | 2018 |
| The burden and characteristics of enteric fever at a healthcare facility in a densely populated area of Kathmandu A Karkey, A Arjyal, KL Anders, MF Boni, S Dongol, S Koirala, PVT My, ... PloS one 5 (11), e13988, 2010 | 100 | 2010 |
| The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water A Karkey, T Jombart, AW Walker, CN Thompson, A Torres, S Dongol, ... PLoS neglected tropical diseases 10 (1), e0004346, 2016 | 98 | 2016 |
| The induction and identification of novel Colistin resistance mutations in Acinetobacter baumannii and their implications N Thi Khanh Nhu, DW Riordan, T Do Hoang Nhu, DP Thanh, G Thwaites, ... Scientific reports 6 (1), 28291, 2016 | 95 | 2016 |
| A high‐resolution genomic analysis of multidrug‐resistant hospital outbreaks of Klebsiella pneumoniae H Chung The, A Karkey, D Pham Thanh, CJ Boinett, AK Cain, M Ellington, ... EMBO molecular medicine 7 (3), 227-239, 2015 | 94 | 2015 |
| South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study H Chung The, MA Rabaa, D Pham Thanh, N De Lappe, M Cormican, ... PLoS medicine 13 (8), e1002055, 2016 | 82 | 2016 |
| The Microbiological and Clinical Characteristics of Invasive Salmonella in Gallbladders from Cholecystectomy Patients in Kathmandu, Nepal S Dongol, CN Thompson, S Clare, TVT Nga, PT Duy, A Karkey, A Arjyal, ... Public Library of Science 7 (10), e47342, 2012 | 80 | 2012 |
| Gatifloxacin versus ceftriaxone for uncomplicated enteric fever in Nepal: an open-label, two-centre, randomised controlled trial A Arjyal, B Basnyat, HT Nhan, S Koirala, A Giri, N Joshi, M Shakya, ... The Lancet infectious diseases 16 (5), 535-545, 2016 | 73 | 2016 |
