Charting a dynamic DNA methylation landscape of the human genome MJ Ziller, H Gu, F Müller, J Donaghey, LTY Tsai, O Kohlbacher, ... Nature 500 (7463), 477-481, 2013 | 1425 | 2013 |
OpenMS–an open-source software framework for mass spectrometry M Sturm, A Bertsch, C Gröpl, A Hildebrandt, R Hussong, E Lange, ... BMC bioinformatics 9, 1-11, 2008 | 1390 | 2008 |
Severe COVID-19 is marked by a dysregulated myeloid cell compartment J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ... Cell 182 (6), 1419-1440. e23, 2020 | 1288 | 2020 |
Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020 | 849 | 2020 |
Visualization of omics data for systems biology N Gehlenborg, SI O'donoghue, NS Baliga, A Goesmann, MA Hibbs, ... Nature methods 7 (Suppl 3), S56-S68, 2010 | 731 | 2010 |
Comprehensive analysis of alternative splicing across tumors from 8,705 patients A Kahles, KV Lehmann, NC Toussaint, M Hüser, SG Stark, ... Cancer cell 34 (2), 211-224. e6, 2018 | 725 | 2018 |
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity M Röttig, MH Medema, K Blin, T Weber, C Rausch, O Kohlbacher Nucleic acids research 39 (suppl_2), W362-W367, 2011 | 702 | 2011 |
OptiType: precision HLA typing from next-generation sequencing data A Szolek, B Schubert, C Mohr, M Sturm, M Feldhahn, O Kohlbacher Bioinformatics 30 (23), 3310-3316, 2014 | 670 | 2014 |
OpenMS: a flexible open-source software platform for mass spectrometry data analysis HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ... Nature methods 13 (9), 741-748, 2016 | 636 | 2016 |
SARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition A Nelde, T Bilich, JS Heitmann, Y Maringer, HR Salih, M Roerden, ... Nature immunology 22 (1), 74-85, 2021 | 601 | 2021 |
Sequence co-evolution gives 3D contacts and structures of protein complexes TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ... elife 3, e03430, 2014 | 530 | 2014 |
Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs) C Rausch, T Weber, O Kohlbacher, W Wohlleben, DH Huson Nucleic acids research 33 (18), 5799-5808, 2005 | 505 | 2005 |
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey, A Tsankov, ... Cell 153 (5), 1149-1163, 2013 | 486 | 2013 |
MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition A Höglund, P Dönnes, T Blum, HW Adolph, O Kohlbacher Bioinformatics 22 (10), 1158-1165, 2006 | 428 | 2006 |
From hype to reality: data science enabling personalized medicine H Fröhlich, R Balling, N Beerenwinkel, O Kohlbacher, S Kumar, ... BMC medicine 16, 1-15, 2018 | 398 | 2018 |
YLoc—an interpretable web server for predicting subcellular localization S Briesemeister, J Rahnenfï¿ ½hrer, O Kohlbacher Nucleic acids research 38 (suppl_2), W497-W502, 2010 | 350 | 2010 |
TOPP—the OpenMS proteomics pipeline O Kohlbacher, K Reinert, C Gröpl, E Lange, N Pfeifer, O Schulz-Trieglaff, ... Bioinformatics 23 (2), e191-e197, 2007 | 338 | 2007 |
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction T Blum, S Briesemeister, O Kohlbacher BMC bioinformatics 10, 1-11, 2009 | 336 | 2009 |
WIPI proteins: essential PtdIns3P effectors at the nascent autophagosome T Proikas-Cezanne, Z Takacs, P Dönnes, O Kohlbacher Journal of cell science 128 (2), 207-217, 2015 | 327 | 2015 |
Tools for label-free peptide quantification S Nahnsen, C Bielow, K Reinert, O Kohlbacher Molecular & Cellular Proteomics 12 (3), 549-556, 2013 | 304 | 2013 |