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Ruxi Qi
Ruxi Qi
在 uci.edu 的电子邮件经过验证
标题
引用次数
引用次数
年份
Amber 2021
DA Case, HM Aktulga, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, ...
University of California, San Francisco, 2021
44322021
Amber 2015 (University of California, San Francisco)
DA Case, IY Ben-Shalom, SR Brozell, DS Cerutti, TE Cheatham III, ...
Google Scholar There is no corresponding record for this reference, 2015
4132015
Recent developments and applications of the MMPBSA method
C Wang, DA Greene, L Xiao, R Qi, R Luo
Frontiers in molecular biosciences 4, 87, 2018
3832018
AMBER 2018; 2018
DA Case, IY Ben-Shalom, SR Brozell, DS Cerutti, TE Cheatham III, ...
University of California, San Francisco, 2018
982018
Expanding the nanoarchitectural diversity through aromatic di-and tri-peptide coassembly: Nanostructures and molecular mechanisms
C Guo, ZA Arnon, R Qi, Q Zhang, L Adler-Abramovich, E Gazit, G Wei
ACS nano 10 (9), 8316-8324, 2016
892016
Amber 2016 university of California
DA Case, RM Betz, DS Cerutti, TE Cheatham III, TA Darden, RE Duke, ...
San Francisco, 2016
812016
Conformational distribution and α-helix to β-sheet transition of human amylin fragment dimer
R Qi, Y Luo, B Ma, R Nussinov, G Wei
Biomacromolecules 15 (1), 122-131, 2014
742014
Amber 2020: University of california
DA Case, K Belfon, IY Ben-Shalom, SR Brozell, DS Cerutti, TEI Cheatham, ...
San Francisco, 2020
712020
Regulation of the Hippo pathway by phosphatidic acid-mediated lipid-protein interaction
H Han, R Qi, JJ Zhou, AP Ta, B Yang, HJ Nakaoka, G Seo, KL Guan, ...
Molecular cell 72 (2), 328-340. e8, 2018
682018
Replica exchange molecular dynamics: a practical application protocol with solutions to common problems and a peptide aggregation and self-assembly example
R Qi, G Wei, B Ma, R Nussinov
Peptide self-assembly: Methods and protocols, 101-119, 2018
632018
Aβ “stretching-and-packing” cross-seeding mechanism can trigger tau protein aggregation
R Qi, Y Luo, G Wei, R Nussinov, B Ma
The Journal of Physical Chemistry Letters 6 (16), 3276-3282, 2015
472015
AMBER 2018
TA Darden, RE Duke, D Ghoreishi, MK Gilson, H Gohlke, AW Goetz, ...
University of California, San Francisco, 2018
442018
Self-aggregation and coaggregation of the p53 core fragment with its aggregation gatekeeper variant
J Lei, R Qi, G Wei, R Nussinov, B Ma
Physical Chemistry Chemical Physics 18 (11), 8098-8107, 2016
282016
Conformational stability and dynamics of the cancer-associated isoform Δ133p53β are modulated by p53 peptides and p53-specific DNA
J Lei, R Qi, Y Tang, W Wang, G Wei, R Nussinov, B Ma
The FASEB Journal 33 (3), 4225, 2019
272019
Amber 2020, 2020
DA Case, K Belfon, IY Ben-Shalom, SR Brozell, DS Cerutti, T Cheatham, ...
Google Scholar There is no corresponding record for this reference, 2019
272019
Amber 16 and AmberTools17
DA Case, DS Cerutti, TE Cheatham, TA Darden, RE Duke, TJ Giese, ...
University of California, San Francisco, 2017
262017
Heterogeneous dielectric implicit membrane model for the calculation of MMPBSA binding free energies
DA Greene, R Qi, R Nguyen, T Qiu, R Luo
Journal of chemical information and modeling 59 (6), 3041-3056, 2019
242019
Interaction Dynamics in inhibiting the aggregation of Aβ peptides by SWCNTs: a combined experimental and coarse-grained molecular dynamic simulation study
D Lin, R Qi, S Li, R He, P Li, G Wei, X Yang
ACS Chemical Neuroscience 7 (9), 1232-1240, 2016
242016
Conformational dynamics of cancer-associated MyD88-TIR domain mutant L252P (L265P) allosterically tilts the landscape toward homo-dimerization
C Zhan, R Qi, G Wei, E Guven-Maiorov, R Nussinov, B Ma
Protein Engineering, Design and Selection 29 (9), 347-354, 2016
202016
Efficient formulation of polarizable Gaussian multipole electrostatics for biomolecular simulations
H Wei, R Qi, J Wang, P Cieplak, Y Duan, R Luo
The Journal of chemical physics 153 (11), 2020
192020
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