Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses BA Benayoun, EA Pollina, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, S Mahmoudi, I Harel, KM Casey, ... Genome research 29 (4), 697-709, 2019 | 272 | 2019 |
A Platform for Rapid Exploration of Aging and Diseases in a Naturally Short-Lived Vertebrate I Harel, BA Benayoun, B Machado, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, CK Hu, MF Pech, ... Cell 160 (5), 1013-1026, 2015 | 247 | 2015 |
Progranulin, lysosomal regulation and neurodegenerative disease AW Kao, A McKay, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, A Brunet, EJ Huang Nature Reviews Neuroscience 18 (6), 325-333, 2017 | 234 | 2017 |
The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan DR Valenzano*, BA Benayoun*, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝 *, E Zhang, PD Etter, CK Hu, ... Cell 163 (6), 1539-54 [*𝐂𝐨-𝐟𝐢𝐫𝐬𝐭 𝐚𝐮𝐭𝐡𝐨𝐫], 2015 | 234 | 2015 |
The genetics of aging: a vertebrate perspective PP Singh, BA Demmitt, RD Nath, A Brunet Cell 177 (1), 200-220, 2019 | 216 | 2019 |
Identification of Ohnolog Genes Originating from Whole Genome Duplication in Early Vertebrates, Based on Synteny Comparison across Multiple Genomes 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, J Arora, H Isambert PLOS Computational Biology 11 (7), e1004394, 2015 | 111 | 2015 |
OHNOLOGS v2: A comprehensive resource for the genes retained from whole genome duplication in vertebrates PP Singh, H Isambert Nucleic acids research 48 (D1), D724-D730, 2019 | 87 | 2019 |
Vertebrate diapause preserves organisms long term through Polycomb complex members CK Hu, W Wang, J Brind’Amour, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, GA Reeves, MC Lorincz, ... Science 367 (6480), 870-874, 2020 | 76 | 2020 |
Learning causal networks with latent variables from multivariate information in genomic data L Verny, N Sella, S Affeldt, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, H Isambert PLoS computational biology 13 (10), e1005662, 2017 | 61 | 2017 |
On the expansion of “dangerous” gene repertoires by whole-genome duplications in early vertebrates 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, S Affeldt, I Cascone, R Selimoglu, J Camonis, H Isambert Cell Reports 2 (5), 1387-1398, 2012 | 58 | 2012 |
The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development JT Wagner, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, AL Romney, CL Riggs, P Minx, SC Woll, ... BMC Genomics 19 (1), 155, 2018 | 34 | 2018 |
Human dominant disease genes are enriched in paralogs originating from whole genome duplication. 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, S Affeldt, G Malaguti, H Isambert PLOS Computational Biology 10 (7), e1003754, 2014 | 25 | 2014 |
Identification of protein aggregates in the aging vertebrate brain with prion-like and phase separation properties I Harel, YR Chen, I Ziv, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, PN Negredo, U Goshtchevsky, ... bioRxiv, 2022 | 22 | 2022 |
Mutations in calmodulin-binding domains of TRPV4/6 channels confer invasive properties to colon adenocarcinoma cells A Arbabian, M Iftinca, C Altier, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, H Isambert, S Coscoy Channels 14 (1), 101-109, 2020 | 20 | 2020 |
An automated feeding system for the African killifish reveals effects of dietary restriction on lifespan and allows scalable assessment of associative learning A McKay, EK Costa, J Chen, CK Hu, X Chen, CN Bedbrook, RC Khondker, ... Elife 11, e69008, 2022 | 18* | 2022 |
Tissue-specific landscape of protein aggregation and quality control in an aging vertebrate YR Chen, I Harel, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, I Ziv, E Moses, U Goshtchevsky, ... bioRxiv, 2022 | 17 | 2022 |
On the retention of gene duplicates prone to dominant deleterious mutations G Malaguti, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, H Isambert Theoretical Population Biology 93, 38-51, 2014 | 12 | 2014 |
Evolution of diapause in the African turquoise killifish by remodeling ancient gene regulatory landscape 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, GA Reeves, K Contrepois, M Ellenberger, C Hu, MP Snyder, ... | 8* | 2021 |
Case for an RNA–prion world: a hypothesis based on conformational diversity 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, A Banerji Journal of Biological Physics 37 (2), 185-188, 2011 | 8 | 2011 |
Dynamic regulation of gonadal transposon control across the lifespan of the naturally short-lived African turquoise killifish BB Teefy, A Adler, A Xu, K Hsu, 𝙋𝙋 𝙎𝙞𝙣𝙜𝙝, BA Benayoun Genome Research 33 (1), 141-153, 2023 | 6 | 2023 |