| Global analysis of small RNA and mRNA targets of Hfq A Zhang, KM Wassarman, C Rosenow, BC Tjaden, G Storz, S Gottesman Molecular microbiology 50 (4), 1111-1124, 2003 | 669 | 2003 |
| Computational analysis of bacterial RNA-Seq data R McClure, D Balasubramanian, Y Sun, M Bobrovskyy, P Sumby, ... Nucleic acids research 41 (14), e140-e140, 2013 | 653 | 2013 |
| Target prediction for small, noncoding RNAs in bacteria B Tjaden, SS Goodwin, JA Opdyke, M Guillier, DX Fu, S Gottesman, ... Nucleic acids research 34 (9), 2791-2802, 2006 | 301 | 2006 |
| De novo assembly of bacterial transcriptomes from RNA-seq data B Tjaden Genome biology 16, 1-10, 2015 | 291 | 2015 |
| Transcriptome analysis of Escherichia coli using high‐density oligonucleotide probe arrays B Tjaden, RM Saxena, S Stolyar, DR Haynor, E Kolker, C Rosenow Nucleic acids research 30 (17), 3732-3738, 2002 | 247 | 2002 |
| The Entomopathogenic Bacterial Endosymbionts Xenorhabdus and Photorhabdus: Convergent Lifestyles from Divergent Genomes JM Chaston, G Suen, SL Tucker, AW Andersen, A Bhasin, E Bode, ... PloS one 6 (11), e27909, 2011 | 226 | 2011 |
| TargetRNA2: identifying targets of small regulatory RNAs in bacteria MB Kery, M Feldman, J Livny, B Tjaden Nucleic acids research 42 (W1), W124-W129, 2014 | 223 | 2014 |
| Geographic location determination including inspection of network address K Chow, S Dua, BC Tjaden US Patent 7,454,523, 2008 | 214 | 2008 |
| TargetRNA: a tool for predicting targets of small RNA action in bacteria B Tjaden Nucleic acids research 36 (suppl_2), W109-W113, 2008 | 171 | 2008 |
| Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets A Zhang, DJ Schu, BC Tjaden, G Storz, S Gottesman Journal of molecular biology 425 (19), 3678-3697, 2013 | 151 | 2013 |
| A Novel Fur- and Iron-Regulated Small RNA, NrrF, Is Required for Indirect Fur-Mediated Regulation of the sdhA and sdhC Genes in Neisseria meningitidis JR Mellin, S Goswami, S Grogan, B Tjaden, CA Genco Journal of bacteriology 189 (10), 3686-3694, 2007 | 146 | 2007 |
| GRIL-seq provides a method for identifying direct targets of bacterial small regulatory RNA by in vivo proximity ligation K Han, B Tjaden, S Lory Nature Microbiology 2, 2016 | 112 | 2016 |
| Probing the sRNA regulatory landscape of P. aeruginosa: post‐transcriptional control of determinants of pathogenicity and antibiotic susceptibility YF Zhang, K Han, CE Chandler, B Tjaden, RK Ernst, S Lory Molecular microbiology 106 (6), 919-937, 2017 | 105 | 2017 |
| Initial Proteome Analysis of Model Microorganism Haemophilus influenzae Strain Rd KW20 E Kolker, S Purvine, MY Galperin, S Stolyar, DR Goodlett, AI Nesvizhskii, ... Journal of bacteriology 185 (15), 4593-4602, 2003 | 87 | 2003 |
| Small non-coding RNAs in Streptomyces coelicolor JP Swiercz, Hindra, J Bobek, HJ Haiser, C Di Berardo, B Tjaden, MA Elliot Nucleic acids research 36 (22), 7240-7251, 2008 | 81 | 2008 |
| Small RNA profiling in Mycobacterium tuberculosis identifies MrsI as necessary for an anticipatory iron sparing response ER Gerrick, T Barbier, MR Chase, R Xu, J François, VH Lin, MJ Szucs, ... Proceedings of the National Academy of Sciences 115 (25), 6464-6469, 2018 | 77 | 2018 |
| System and method for efficient and adaptive web accesses filtering SR Nair, K Chow, KT Deeter, BC Tjaden, I Corporation US Patent 6,741,990, 2004 | 74 | 2004 |
| The gonococcal transcriptome during infection of the lower genital tract in women R McClure, K Nudel, P Massari, B Tjaden, X Su, PA Rice, CA Genco PloS one 10 (8), e0133982, 2015 | 62 | 2015 |
| A computational system for identifying operons based on RNA-seq data B Tjaden Methods 176, 62-70, 2020 | 60 | 2020 |
| Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis B Tjaden, DR Haynor, S Stolyar, C Rosenow, E Kolker Bioinformatics 18 (suppl_1), S337-S344, 2002 | 52 | 2002 |
