Diverse and abundant antibiotic resistance genes in Chinese swine farms YG Zhu, TA Johnson, JQ Su, M Qiao, GX Guo, RD Stedtfeld, ... Proceedings of the National Academy of Sciences 110 (9), 3435-3440, 2013 | 2381 | 2013 |
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database B Jia, AR Raphenya, B Alcock, N Waglechner, P Guo, KK Tsang, BA Lago, ... Nucleic acids research, gkw1004, 2016 | 2197 | 2016 |
In-feed antibiotic effects on the swine intestinal microbiome T Looft, TA Johnson, HK Allen, DO Bayles, DP Alt, RD Stedtfeld, WJ Sul, ... Proceedings of the National Academy of Sciences 109 (5), 1691-1696, 2012 | 1123 | 2012 |
High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant A Karkman, TA Johnson, C Lyra, RD Stedtfeld, M Tamminen, JM Tiedje, ... FEMS microbiology ecology 92 (3), fiw014, 2016 | 233 | 2016 |
Clusters of antibiotic resistance genes enriched together stay together in swine agriculture TA Johnson, RD Stedtfeld, Q Wang, JR Cole, SA Hashsham, T Looft, ... MBio 7 (2), 10.1128/mbio. 02214-15, 2016 | 189 | 2016 |
Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments WI Muziasari, K Pärnänen, TA Johnson, C Lyra, A Karkman, RD Stedtfeld, ... FEMS microbiology ecology 92 (4), fiw052, 2016 | 182 | 2016 |
Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples S Iwai, TA Johnson, B Chai, SA Hashsham, JM Tiedje Applied and environmental microbiology 77 (11), 3551-3557, 2011 | 92 | 2011 |
Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter CR Penton, TA Johnson, JF Quensen III, S Iwai, JR Cole, JM Tiedje Frontiers in microbiology 4, 279, 2013 | 87 | 2013 |
Swine growth promotion with antibiotics or alternatives can increase antibiotic resistance gene mobility potential J Muurinen, J Richert, CL Wickware, B Richert, TA Johnson Scientific reports 11 (1), 5485, 2021 | 55 | 2021 |
Dietary fiber hierarchical specificity: the missing link for predictable and strong shifts in gut bacterial communities TM Cantu-Jungles, N Bulut, E Chambry, A Ruthes, M Iacomini, ... MBio 12 (3), 10.1128/mbio. 01028-21, 2021 | 52 | 2021 |
Antimicrobial resistance dashboard application for mapping environmental occurrence and resistant pathogens RD Stedtfeld, MR Williams, U Fakher, TA Johnson, TM Stedtfeld, F Wang, ... FEMS microbiology ecology 92 (3), fiw020, 2016 | 41 | 2016 |
The in-feed antibiotic carbadox induces phage gene transcription in the swine gut microbiome TA Johnson, T Looft, AJ Severin, DO Bayles, DJ Nasko, KE Wommack, ... MBio 8 (4), 10.1128/mbio. 00709-17, 2017 | 40 | 2017 |
In-feed bacitracin methylene disalicylate modulates the turkey microbiota and metabolome in a dose-dependent manner TA Johnson, MJ Sylte, T Looft Scientific reports 9 (1), 8212, 2019 | 38 | 2019 |
Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay B Chai, TV Tsoi, S Iwai, C Liu, JA Fish, C Gu, TA Johnson, G Zylstra, ... PLoS One 11 (6), e0157008, 2016 | 35 | 2016 |
On-farm colorimetric detection of Pasteurella multocida, Mannheimia haemolytica, and Histophilus somni in crude bovine nasal samples A Pascual-Garrigos, MK Maruthamuthu, A Ault, JL Davidson, G Rudakov, ... Veterinary research 52, 1-12, 2021 | 33 | 2021 |
Composition and diversity of the preputial microbiota in healthy bulls CL Wickware, TA Johnson, JH Koziol Theriogenology 145, 231-237, 2020 | 28 | 2020 |
Identification of bovine respiratory disease through the nasal microbiome RE Centeno-Martinez, N Glidden, S Mohan, JL Davidson, ... Animal microbiome 4 (1), 15, 2022 | 24 | 2022 |
Composition and diversity of the seminal microbiota in bulls and its association with semen parameters JH Koziol, T Sheets, CL Wickware, TA Johnson Theriogenology 182, 17-25, 2022 | 22 | 2022 |
Loop-Mediated Isothermal Amplification for the Detection of Pasteurella multocida, Mannheimia haemolytica, and Histophilus somni in Bovine Nasal Samples S Mohan, A Pascual-Garrigos, H Brouwer, D Pillai, J Koziol, A Ault, ... ACS Agricultural Science & Technology 1 (2), 100-108, 2021 | 19 | 2021 |
Evaluation of nucleic acid isothermal amplification methods for human clinical microbial infection detection BE Etchebarne, Z Li, RD Stedtfeld, MC Nicholas, MR Williams, ... Frontiers in Microbiology 8, 2211, 2017 | 19 | 2017 |