关注
Francesco Trozzi
Francesco Trozzi
在 smu.edu 的电子邮件经过验证
标题
引用次数
引用次数
年份
UMAP as a dimensionality reduction tool for molecular dynamics simulations of biomacromolecules: A comparison study
F Trozzi, X Wang, P Tao
The Journal of Physical Chemistry B 125 (19), 5022-5034, 2021
512021
Predicting potential SARS-COV-2 drugs—In depth drug database screening using deep neural network framework SSnet, classical virtual screening and docking
N Karki, N Verma, F Trozzi, P Tao, E Kraka, B Zoltowski
International Journal of Molecular Sciences 22 (4), 1573, 2021
412021
Ssnet: A deep learning approach for protein-ligand interaction prediction
N Verma, X Qu, F Trozzi, M Elsaied, N Karki, Y Tao, B Zoltowski, ...
International journal of molecular sciences 22 (3), 1392, 2021
342021
Explore protein conformational space with variational autoencoder
H Tian, X Jiang, F Trozzi, S Xiao, EC Larson, P Tao
Frontiers in molecular biosciences 8, 781635, 2021
282021
Deciphering the Allosteric Process of the Phaeodactylum tricornutum Aureochrome 1a LOV Domain
H Tian, F Trozzi, BD Zoltowski, P Tao
The Journal of Physical Chemistry B 124 (41), 8960-8972, 2020
242020
Engineering the Fullerene‐protein Interface by Computational Design: The Sum is More than its Parts
F Trozzi, TD Marforio, A Bottoni, F Zerbetto, M Calvaresi
Israel Journal of Chemistry 57 (6), 547-552, 2017
142017
Dynamics of hydrogen bonds in the secondary structures of allosteric protein Avena Sativa phototropin 1
MT Ibrahim, F Trozzi, P Tao
Computational and structural biotechnology journal 20, 50-64, 2022
122022
Mechanistic insights into enzyme catalysis from explaining machine-learned quantum mechanical and molecular mechanical minimum energy pathways
Z Song, F Trozzi, H Tian, C Yin, P Tao
ACS Physical Chemistry Au 2 (4), 316-330, 2022
82022
QM/MM modeling of class A β-lactamases reveals distinct acylation pathways for ampicillin and cefalexin
Z Song, F Trozzi, T Palzkill, P Tao
Organic & biomolecular chemistry 19 (42), 9182-9189, 2021
82021
Investigating the conformational landscape of AlphaFold2-predicted protein kinase structures
C Al-Masri, F Trozzi, SH Lin, O Tran, N Sahni, M Patek, A Cichonska, ...
Bioinformatics Advances 3 (1), vbad129, 2023
62023
Dimeric allostery mechanism of the plant circadian clock photoreceptor ZEITLUPE
F Trozzi, F Wang, G Verkhivker, BD Zoltowski, P Tao
PLOS Computational Biology 17 (7), e1009168, 2021
52021
SSnet-Secondary Structure based End-to-End Learning model for Protein-Ligand Interaction Prediction
N Verma, X Qu, F Trozzi, M Elsaied, Y Tao, EC Larson, E Kraka
bioRxiv, 2020
42020
Allosteric control of ACE2 peptidase domain dynamics
F Trozzi, N Karki, Z Song, N Verma, E Kraka, BD Zoltowski, P Tao
Organic & biomolecular chemistry 20 (17), 3605-3618, 2022
32022
Organic & Biomolecular Chemistry
R Hesse, A Jäger, AW Schmidt, HJ Knölker
Org. Biomol. Chem 12, 3866-3876, 2014
12014
Exploration of protein conformational space with variational autoencoder
H Tian, X Jiang, F Trozzi, S Xiao, E Larson, P Tao
American Chemical Society SciMeetings 3 (1), 2022
2022
Mechanistic Insights into Protein Allostery in LOV Domains and ACE2 PD via Computational Approaches
F Trozzi
2022
Supporting Information Dynamics of hydrogen bonds in the secondary structures of allosteric protein Avena Sativa phototropin
MT Ibrahim, F Trozzi, P Tao
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