| Pangenomics in crop improvement—From coding structural variations to finding regulatory variants with pangenome graphs SF Zanini, PE Bayer, R Wells, RJ Snowdon, J Batley, RK Varshney, ... The Plant Genome 15 (1), e20177, 2022 | 40 | 2022 |
| Comparative Analysis of Transcriptome and sRNAs Expression Patterns in the Brachypodium distachyon—Magnaporthe oryzae Pathosystems S Zanini, E Šečić, T Busche, M Galli, Y Zheng, J Kalinowski, KH Kogel International journal of molecular sciences 22 (2), 650, 2021 | 19 | 2021 |
| A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosis E Šečić, S Zanini, D Wibberg, L Jelonek, T Busche, J Kalinowski, S Nasfi, ... BMC biology 19 (1), 1-22, 2021 | 17 | 2021 |
| A bioinformatics pipeline for the analysis and target prediction of rna effectors in bidirectional communication during plant–microbe interactions S Zanini, E Šečić, L Jelonek, KH Kogel Frontiers in plant science 9, 1212, 2018 | 14 | 2018 |
| A rice GRAS gene has an impact on the success of arbuscular mycorrhizal colonization V Fiorilli, V Volpe, S Zanini, M Vallino, S Abbà, P Bonfante American Journal of Plant Sciences 6 (12), 1905-1915, 2015 | 12 | 2015 |
| Further Elucidation of the Argonaute and Dicer Protein Families in the Model Grass Species Brachypodium distachyon E Šečić, S Zanini, KH Kogel Frontiers in plant science 10, 1332, 2019 | 8 | 2019 |
| Discovery of interaction-related sRNAs and their targets in the Brachypodium distachyon and Magnaporthe oryzae pathosystem S Zanini, E Šečić, T Busche, J Kalinowski, KH Kogel BioRxiv, 631945, 2019 | 7 | 2019 |
| Benchmarking Oxford Nanopore read alignment‐based insertion and deletion detection in crop plant genomes G Yildiz, SF Zanini, NP Afsharyan, C Obermeier, RJ Snowdon, AA Golicz The Plant Genome, e20314, 2023 | 3 | 2023 |
| Pangenomics in Agriculture G Yildiz, S Zanini, P Knight, AA Golicz Next-Generation Sequencing and Agriculture, 163-187, 2022 | 2 | 2022 |
| Graphical pangenomics-enabled characterisation of structural variant impact on gene expression in Brassica napus AA Golicz, G Yildiz, S Weber, T Kox, A Abbadi, RJ Snowdon, SF Zanini bioRxiv, 2024.03. 14.585028, 2024 | | 2024 |
| Benchmarking Oxford Nanopore Read Alignment-Based Structural Variant Detection Tools in Crop Plant Genomes G Yildiz, SF Zanini, NP Afsharyan, C Obermeier, RJ Snowdon, AA Golicz bioRxiv, 2022.09. 23.508909, 2022 | | 2022 |
