Rapid “open-source” engineering of customized zinc-finger nucleases for highly efficient gene modification ML Maeder, S Thibodeau-Beganny, A Osiak, DA Wright, RM Anthony, ... Molecular cell 31 (2), 294-301, 2008 | 968 | 2008 |
Predicting linear B‐cell epitopes using string kernels Y EL‐Manzalawy, D Dobbs, V Honavar Journal of Molecular Recognition: An Interdisciplinary Journal 21 (4), 243-255, 2008 | 811 | 2008 |
Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA) JD Sander, EJ Dahlborg, MJ Goodwin, L Cade, F Zhang, D Cifuentes, ... Nature methods 8 (1), 67-69, 2011 | 795 | 2011 |
High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases F Zhang, ML Maeder, E Unger-Wallace, JP Hoshaw, D Reyon, ... Proceedings of the National Academy of Sciences 107 (26), 12028-12033, 2010 | 479 | 2010 |
Predicting RNA-protein interactions using only sequence information UK Muppirala, VG Honavar, D Dobbs BMC bioinformatics 12, 1-11, 2011 | 474 | 2011 |
ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool JD Sander, ML Maeder, D Reyon, DF Voytas, JK Joung, D Dobbs Nucleic acids research 38 (suppl_2), W462-W468, 2010 | 425 | 2010 |
Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases SJ Curtin, F Zhang, JD Sander, WJ Haun, C Starker, NJ Baltes, D Reyon, ... Plant physiology 156 (2), 466-473, 2011 | 385 | 2011 |
Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool JD Sander, P Zaback, JK Joung, DF Voytas, D Dobbs Nucleic acids research 35 (suppl_2), W599-W605, 2007 | 362 | 2007 |
Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly DA Wright, S Thibodeau-Beganny, JD Sander, RJ Winfrey, AS Hirsh, ... Nature protocols 1 (3), 1637-1652, 2006 | 260 | 2006 |
Predicting flexible length linear B-cell epitopes Y El-Manzalawy, D Dobbs, V Honavar Computational Systems Bioinformatics: (Volume 7), 121-132, 2008 | 252 | 2008 |
RNABindR: a server for analyzing and predicting RNA-binding sites in proteins M Terribilini, JD Sander, JH Lee, P Zaback, RL Jernigan, V Honavar, ... Nucleic acids research 35 (suppl_2), W578-W584, 2007 | 228 | 2007 |
Prediction of RNA binding sites in proteins from amino acid sequence M Terribilini, JH Lee, C Yan, RL Jernigan, V Honavar, D Dobbs RNA 12 (8), 1450-1462, 2006 | 223 | 2006 |
Glycosylation site prediction using ensembles of Support Vector Machine classifiers C Caragea, J Sinapov, A Silvescu, D Dobbs, V Honavar BMC bioinformatics 8, 1-13, 2007 | 221 | 2007 |
Characterization of protein–protein interfaces C Yan, F Wu, RL Jernigan, D Dobbs, V Honavar The protein journal 27, 59-70, 2008 | 213 | 2008 |
A two-stage classifier for identification of protein–protein interface residues C Yan, D Dobbs, V Honavar Bioinformatics 20 (suppl_1), i371-i378, 2004 | 201 | 2004 |
Computational prediction of protein interfaces: A review of data driven methods LC Xue, D Dobbs, AMJJ Bonvin, V Honavar FEBS letters 589 (23), 3516-3526, 2015 | 190 | 2015 |
Predicting DNA-binding sites of proteins from amino acid sequence C Yan, M Terribilini, F Wu, RL Jernigan, D Dobbs, V Honavar BMC bioinformatics 7, 1-10, 2006 | 182 | 2006 |
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Dynamics of telomere length variation in Tetrahymena thermophila DD Larson, EA Spangler, EH Blackburn Cell 50 (3), 477-483, 1987 | 160 | 1987 |
PRIDB: a protein–RNA interface database BA Lewis, RR Walia, M Terribilini, J Ferguson, C Zheng, V Honavar, ... Nucleic acids research 39 (suppl_1), D277-D282, 2010 | 149 | 2010 |