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Andy T. Kong
Andy T. Kong
未知所在单位机构
在 arsci.com 的电子邮件经过验证
标题
引用次数
引用次数
年份
MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics
AT Kong, FV Leprevost, DM Avtonomov, D Mellacheruvu, AI Nesvizhskii
Nature methods 14 (5), 513-520, 2017
12782017
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
4652019
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
3352020
Philosopher: a versatile toolkit for shotgun proteomics data analysis
F da Veiga Leprevost, SE Haynes, DM Avtonomov, HY Chang, ...
Nature methods 17 (9), 869-870, 2020
3072020
Identification of modified peptides using localization-aware open search
F Yu, GC Teo, AT Kong, SE Haynes, DM Avtonomov, DJ Geiszler, ...
Nature communications 11 (1), 4065, 2020
1682020
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
MA Freeberg, T Han, JJ Moresco, A Kong, YC Yang, ZJ Lu, JR Yates, ...
Genome biology 14, 1-20, 2013
1112013
PTM-Shepherd: analysis and summarization of post-translational and chemical modifications from open search results
DJ Geiszler, AT Kong, DM Avtonomov, F Yu, F da Veiga Leprevost, ...
Molecular & Cellular Proteomics 20, 2021
832021
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 180 (1), 207, 2020
532020
Analysis of DIA proteomics data using MSFragger-DIA and FragPipe computational platform
F Yu, GC Teo, AT Kong, K Fröhlich, GX Li, V Demichev, AI Nesvizhskii
Nature Communications 14 (1), 4154, 2023
402023
Clinical proteomic tumor analysis consortium. Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983, 2019
372019
Crystal-C: a computational tool for refinement of open search results
HY Chang, AT Kong, F da Veiga Leprevost, DM Avtonomov, SE Haynes, ...
Journal of proteome research 19 (6), 2511-2515, 2020
302020
DeltaMass: Automated detection and visualization of mass shifts in proteomic open-search results
DM Avtonomov, A Kong, AI Nesvizhskii
Journal of proteome research 18 (2), 715-720, 2018
242018
One-stop analysis of DIA proteomics data using MSFragger-DIA and FragPipe computational platform
F Yu, GC Teo, AT Kong, GX Li, V Demichev, AI Nesvizhskii
bioRxiv, 2022.10. 28.514272, 2022
82022
Sulfoproteomics Workflow with Precursor Ion Accurate Mass Shift Analysis Reveals Novel Tyrosine Sulfoproteins in the Golgi
HK Kweon, AT Kong, KE Hersberger, S Huang, AI Nesvizhskii, Y Wang, ...
Journal of Proteome Research 23 (1), 71-83, 2023
22023
Using MSFragger for ultrafast database searching
AI Nesvizhskii, AT Kong, FV Leprevost, DM Avtonomov, D Mellacheruvu
2017
Computational Strategies for Proteogenomics Analyses
A Kong
2017
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