Multi-Omics Analysis Reveals Mitochondrial Stress as a Central Hub for Spaceflight Biological Impact W da Silveira, H Fazelinia, SB Rosenthal, E Laiakis, C Meydan, Y Kidane, ... | 217* | 2020 |
Current progress and open challenges for applying deep learning across the biosciences N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ... Nature Communications 13 (1), 1728, 2022 | 170 | 2022 |
Infectious severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in exhaled aerosols and efficacy of masks during early mild infection OO Adenaiye, J Lai, PJ Bueno de Mesquita, F Hong, S Youssefi, ... Clinical Infectious Diseases 75 (1), e241-e248, 2022 | 129 | 2022 |
Notes from the field: early evidence of the SARS-CoV-2 B. 1.1. 529 (Omicron) variant in community wastewater—United States, November–December 2021 AE Kirby MMWR. Morbidity and Mortality Weekly Report 71, 2022 | 70 | 2022 |
Role of miR-2392 in driving SARS-CoV-2 infection JT McDonald, FJ Enguita, D Taylor, RJ Griffin, W Priebe, MR Emmett, ... Cell reports 37 (3), 2021 | 64* | 2021 |
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ... Genome research 31 (4), 635-644, 2021 | 55* | 2021 |
Direct comparison of RT-ddPCR and targeted amplicon sequencing for SARS-CoV-2 mutation monitoring in wastewater EG Lou, N Sapoval, C McCall, L Bauhs, R Carlson-Stadler, P Kalvapalle, ... Science of The Total Environment 833, 155059, 2022 | 35 | 2022 |
Enabling accurate and early detection of recently emerged SARS-CoV-2 variants of concern in wastewater N Sapoval, Y Liu, EG Lou, L Hopkins, KB Ensor, R Schneider, LB Stadler, ... Nature Communications 14 (1), 2834, 2023 | 22* | 2023 |
Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters P Gallego-García, N Varela, N Estévez-Gómez, L De Chiara, ... Virus Evolution 8 (1), veac008, 2022 | 9 | 2022 |
KOMB: K-core based de novo characterization of copy number variation in microbiomes A Balaji, N Sapoval, C Seto, RAL Elworth, Y Fu, MG Nute, T Savidge, ... Computational and Structural Biotechnology Journal 20, 3208-3222, 2022 | 6* | 2022 |
Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets B Kille, Y Liu, N Sapoval, M Nute, L Rauchwerger, N Amato, TJ Treangen 2021 IEEE International Parallel and Distributed Processing Symposium …, 2021 | 6 | 2021 |
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates AM Mc Cartney, M Mahmoud, M Jochum, DP Agustinho, B Zorman, ... F1000Research 10, 2021 | 5 | 2021 |
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms K Walker, D Kalra, R Lowdon, G Chen, D Molik, DC Soto, F Dabbaghie, ... F1000Research 11, 2022 | 2 | 2022 |
Coexistence of Wi-Fi and WAVE in the DSRC Spectrum: Impact on WAVE Latency and Throughput M Ghosh, N Sapoval, SK Mahmud SAE Technical Paper, 2018 | 2 | 2018 |
Crykey: rapid identification of SARS-CoV-2 cryptic mutations in wastewater Y Liu, N Sapoval, P Gallego-García, L Tomás, D Posada, TJ Treangen, ... Nature Communications 15 (1), 4545, 2024 | 1 | 2024 |
Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens MX Wang, EG Lou, N Sapoval, E Kim, P Kalvapalle, B Kille, RAL Elworth, ... bioRxiv, 2023 | 1 | 2023 |
Intrahost-diversity of influenza A virus in upper and lower respiratory tract derived samples from a college community N Sapoval, PJB de Mesquita, Y Liu, R Wang, TR Liu, J Garza, T Williams, ... medRxiv, 2021.10. 27.21265424, 2021 | 1 | 2021 |
A New Open Structure of the Insulin Degrading Enzyme Provides Insights into the Conformational Transition of the Molecule N Sapoval, EJ Haddadian, WJ Tang Biophysical Journal 116 (3), 48a, 2019 | 1 | 2019 |
Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet N Sapoval, Y Liu, K Curry, B Kille, W Huang, N Kokroko, MG Nute, ... bioRxiv, 2024.06. 01.596961, 2024 | | 2024 |
KombOver: Efficient k-core and K-truss based characterization of perturbations within the human gut microbiome N Sapoval, M Tanevski, TJ Treangen PACIFIC SYMPOSIUM ON BIOCOMPUTING 2024, 506-520, 2023 | | 2023 |