| Revised Phylogeny and Novel Horizontally Acquired Virulence Determinants of the Model Soft Rot Phytopathogen Pectobacterium wasabiae SCC3193 J Nykyri, O Niemi, P Koskinen, J Nokso-Koivisto, M Pasanen, M Broberg, ... PLoS Pathogens 8 (11), e1003013, 2012 | 129 | 2012 |
| Bombali virus in Mops condylurus bat, Kenya KM Forbes, PW Webala, AJ Jääskeläinen, S Abdurahman, J Ogola, ... Emerging Infectious Diseases 25 (5), 955, 2019 | 108 | 2019 |
| Detection of novel tick-borne pathogen, Alongshan virus, in Ixodes ricinus ticks, south-eastern Finland, 2019 S Kuivanen, L Levanov, L Kareinen, T Sironen, AJ Jääskeläinen, ... Eurosurveillance 24 (27), 1900394, 2019 | 83 | 2019 |
| Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types I Plyusnin, R Kant, AJ Jääskeläinen, T Sironen, L Holm, O Vapalahti, ... Virus evolution 6 (2), veaa091, 2020 | 44 | 2020 |
| HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences PT Truong Nguyen, I Plyusnin, T Sironen, O Vapalahti, R Kant, T Smura BMC bioinformatics 22, 1-8, 2021 | 41 | 2021 |
| Automated 3D phenotype analysis using data mining I Plyusnin, AR Evans, A Karme, A Gionis, J Jernvall PLoS One 3 (3), e1742, 2008 | 40 | 2008 |
| Introduction and rapid spread of SARS-CoV-2 Omicron variant and dynamics of BA. 1 and BA. 1.1 sublineages, Finland, December 2021 H Vauhkonen, PT Nguyen, R Kant, I Plyusnin, M Erdin, S Kurkela, ... Emerging Infectious Diseases 28 (6), 1229, 2022 | 17 | 2022 |
| Incidence trends for SARS-CoV-2 alpha and beta variants, Finland, spring 2021 R Kant, PT Nguyen, S Blomqvist, M Erdin, H Alburkat, M Suvanto, ... Emerging Infectious Diseases 27 (12), 3137, 2021 | 16 | 2021 |
| Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences I Plyusnin, L Holm, P Törönen PLoS computational biology 15 (11), e1007419, 2019 | 13 | 2019 |
| Comprehensive comparison of graph based multiple protein sequence alignment strategies I Plyusnin, L Holm Bmc Bioinformatics 13, 1-11, 2012 | 11 | 2012 |
| LOCP—locating pilus operons in gram-positive bacteria I Plyusnin, L Holm, M Kankainen Bioinformatics 25 (9), 1187-1188, 2009 | 11 | 2009 |
| Enhanced viral metagenomics with Lazypipe 2 I Plyusnin, O Vapalahti, T Sironen, R Kant, T Smura Viruses 15 (2), 431, 2023 | 10 | 2023 |
| Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types. Virus Evol 6: veaa091 I Plyusnin, R Kant, AJ Jääskeläinen, T Sironen, L Holm, O Vapalahti, ... | 5 | 2020 |
| Partial genome characterization of novel parapoxvirus in horse, Finland J Virtanen, M Hautaniemi, L Dutra, I Plyusnin, K Hautala, T Smura, ... Emerging infectious diseases 29 (9), 1941, 2023 | 3 | 2023 |
| ClusTRace, a bioinformatic pipeline for analyzing clusters in virus phylogenies I Plyusnin, PT Truong Nguyen, T Sironen, O Vapalahti, T Smura, R Kant BMC bioinformatics 23 (1), 196, 2022 | 1 | 2022 |
| Enhanced Viral Metagenomics with Lazypipe 2. Viruses 2023, 15, 431 I Plyusnin, O Vapalahti, T Sironen, R Kant, T Smura | | 2023 |
| Correction: Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences I Plyusnin, L Holm, P Törönen PLOS Computational Biology 18 (6), e1010249, 2022 | | 2022 |
| Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences (vol 15, e1007419, 2019) I Plyusnin, L Holm, P Toronen PLOS COMPUTATIONAL BIOLOGY 18 (6), 2022 | | 2022 |
| Introduction and rapid spread of SARS-CoV-2 Omicron variant and the dynamics of its sub-lineages BA. 1 and BA. 1.1, December 2021, Finland H Vauhkonen, P Truong, R Kant, I Plyusnin, M Erdin, S Kurkela, ... | | 2022 |
| The rise and fall of Alpha and Beta variants of SARS-CoV2 in Finland in spring of 2021 R Kant, PT Nguyen, S Blomqvist, M Erdin, H Alburkat, M Suvanto, ... | | 2021 |
