| The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ... Nucleic acids research 48 (D1), D606-D612, 2020 | 894 | 2020 |
| Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR RD Olson, R Assaf, T Brettin, N Conrad, C Cucinell, JJ Davis, ... Nucleic acids research 51 (D1), D678-D689, 2023 | 400 | 2023 |
| Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella M Nguyen, SW Long, PF McDermott, RJ Olsen, R Olson, RL Stevens, ... Journal of clinical microbiology 57 (2), 10.1128/jcm. 01260-18, 2019 | 236 | 2019 |
| Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae M Nguyen, T Brettin, SW Long, JM Musser, RJ Olsen, R Olson, M Shukla, ... Scientific reports 8 (1), 421, 2018 | 177 | 2018 |
| Molecular architecture of early dissemination and massive second wave of the SARS-CoV-2 virus in a major metropolitan area SW Long, RJ Olsen, PA Christensen, DW Bernard, JJ Davis, M Shukla, ... MBio 11 (6), 10.1128/mbio. 02707-20, 2020 | 134 | 2020 |
| Delta variants of SARS-CoV-2 cause significantly increased vaccine breakthrough COVID-19 cases in Houston, Texas PA Christensen, RJ Olsen, SW Long, S Subedi, JJ Davis, P Hodjat, ... The American journal of pathology 192 (2), 320-331, 2022 | 104 | 2022 |
| HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes M Nguyen, A Ekstrom, X Li, Y Yin Toxins 7 (10), 4035-4053, 2015 | 47 | 2015 |
| Predicting antimicrobial resistance using conserved genes M Nguyen, R Olson, M Shukla, M VanOeffelen, JJ Davis PLoS computational biology 16 (10), e1008319, 2020 | 46 | 2020 |
| Trajectory of growth of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants in Houston, Texas, January through May 2021, based on 12,476 genome sequences RJ Olsen, PA Christensen, SW Long, S Subedi, P Hodjat, R Olson, ... The American Journal of Pathology 191 (10), 1754-1773, 2021 | 28 | 2021 |
| Developing anin silicominimum inhibitory concentration panel test forKlebsiella pneumoniae M Nguyen, T Brettin, SW Long, RJ Olsen, JM Musser, R Olson, M Shukla, ... | 22 | 2017 |
| A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes M VanOeffelen, M Nguyen, D Aytan-Aktug, T Brettin, EM Dietrich, ... Briefings in Bioinformatics 22 (6), bbab313, 2021 | 21 | 2021 |
| Using machine learning to predict antimicrobial minimum inhibitory concentrations and associated genomic features for nontyphoidal Salmonella M Nguyen, SW Long, PF McDermott, RJ Olsen, R Olson, RL Stevens, ... BioRxiv, 380782, 2018 | 21 | 2018 |
| Machine learning techniques in searches for tth in the h→ bb decay channel R Santos, M Nguyen, J Webster, S Ryu, J Adelman, S Chekanov, J Zhou Journal of Instrumentation 12 (04), P04014, 2017 | 18 | 2017 |
| A genome-based model to predict the virulence of Pseudomonas aeruginosa isolates NB Pincus, EA Ozer, JP Allen, M Nguyen, JJ Davis, DR Winter, ... MBio 11 (4), 10.1128/mbio. 01527-20, 2020 | 15 | 2020 |
| Molecular architecture of early dissemination and evolution of the SARS-CoV-2 virus in metropolitan Houston, Texas SW Long, RJ Olsen, PA Christensen, DW Bernard, JR Davis, M Shukla, ... BioRxiv, 2020.05. 01.072652, 2020 | 15 | 2020 |
| Predicting antimicrobial resistance using partial genome alignments D Aytan-Aktug, M Nguyen, PTLC Clausen, RL Stevens, FM Aarestrup, ... Msystems 6 (3), 10.1128/msystems. 00185-21, 2021 | 11 | 2021 |
| PlasmidHostFinder: prediction of plasmid hosts using random forest D Aytan-Aktug, PTLC Clausen, J Szarvas, P Munk, S Otani, M Nguyen, ... Msystems 7 (2), e01180-21, 2022 | 10 | 2022 |
| Molecular architecture of early dissemination and massive second wave of the SARS-CoV-2 virus in a major metropolitan area. mBio 11: e02707-20 SW Long, RJ Olsen, PA Christensen, DW Bernard, JJ Davis, M Shukla, ... | 9 | 2020 |
| SourceFinder: A machine-learning-based tool for identification of chromosomal, plasmid, and bacteriophage sequences from assemblies D Aytan-Aktug, V Grigorjev, J Szarvas, PTLC Clausen, P Munk, M Nguyen, ... Microbiology Spectrum 10 (6), e02641-22, 2022 | 7 | 2022 |
| Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae. Sci Rep. 2018; 8 (1): 421 M Nguyen, T Brettin, SW Long, JM Musser, RJ Olsen, R Olson Epub 2018/01/13. https://doi. org/10.1038/s41598-017-18972-w PMID: 29323230, 0 | 7 | |
