starBase v2. 0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data JH Li, S Liu, H Zhou, LH Qu, JH Yang Nucleic acids research 42 (Database issue), D92-7, 2014 | 4626 | 2014 |
RMBase v2. 0: deciphering the map of RNA modifications from epitranscriptome sequencing data JJ Xuan, WJ Sun, PH Lin, KR Zhou, S Liu, LL Zheng, LH Qu, JH Yang Nucleic acids research 46 (D1), D327-D334, 2018 | 356 | 2018 |
ChIPBase v2. 0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data KR Zhou, S Liu, WJ Sun, LL Zheng, H Zhou, JH Yang, LH Qu Nucleic Acids Research 45 (D1), D43-D50, 2017 | 265 | 2017 |
deepBase v2. 0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data LL Zheng, JH Li, J Wu, WJ Sun, S Liu, ZL Wang, H Zhou, JH Yang, LH Qu Nucleic acids research, gkv1273, 2015 | 213 | 2015 |
RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data WJ Sun, JH Li, S Liu, J Wu, H Zhou, LH Qu, JH Yang Nucleic acids research, gkv1036, 2015 | 188 | 2015 |
m6A RNA modifications are measured at single-base resolution across the mammalian transcriptome L Hu, S Liu, Y Peng, R Ge, R Su, C Senevirathne, BT Harada, Q Dai, ... Nature biotechnology 40 (8), 1210-1219, 2022 | 171 | 2022 |
RNA demethylation increases the yield and biomass of rice and potato plants in field trials Q Yu, S Liu, L Yu, Y Xiao, S Zhang, X Wang, Y Xu, H Yu, Y Li, J Yang, ... Nature Biotechnology 39 (12), 1581-1588, 2021 | 143 | 2021 |
tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers LL Zheng, WL Xu, S Liu, WJ Sun, JH Li, J Wu, JH Yang, LH Qu Nucleic acids research 44 (W1), W185-W193, 2016 | 129 | 2016 |
Stabilization of ERK-phosphorylated METTL3 by USP5 increases m6A methylation HL Sun, AC Zhu, Y Gao, H Terajima, Q Fei, S Liu, L Zhang, Z Zhang, ... Molecular cell 80 (4), 633-647. e7, 2020 | 110 | 2020 |
Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution Q Dai, LS Zhang, HL Sun, K Pajdzik, L Yang, C Ye, CW Ju, S Liu, Y Wang, ... Nature biotechnology 41 (3), 344-354, 2023 | 108 | 2023 |
Inhibition of the JNK/MAPK signaling pathway by myogenesis-associated miRNAs is required for skeletal muscle development SJ Xie, JH Li, HF Chen, YY Tan, SR Liu, Y Zhang, H Xu, JH Yang, S Liu, ... Cell Death & Differentiation 25 (9), 1581-1597, 2018 | 103 | 2018 |
Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination YL Xiao, S Liu, R Ge, Y Wu, C He, M Chen, W Tang Nature biotechnology 41 (7), 993-1003, 2023 | 90 | 2023 |
Discovery of protein–lncRNA interactions by integrating large-scale CLIP-Seq and RNA-Seq datasets JH Li, S Liu, LL Zheng, J Wu, WJ Sun, ZL Wang, H Zhou, LH Qu, JH Yang Frontiers in bioengineering and biotechnology 2, 88, 2015 | 84 | 2015 |
REPIC: a database for exploring the N6-methyladenosine methylome S Liu, A Zhu, C He, M Chen Genome biology 21, 1-13, 2020 | 80 | 2020 |
miR‐372 and miR‐373 enhance the stemness of colorectal cancer cells by repressing differentiation signaling pathways LQ Wang, P Yu, B Li, YH Guo, ZR Liang, LL Zheng, JH Yang, H Xu, S Liu, ... Molecular oncology 12 (11), 1949-1964, 2018 | 66 | 2018 |
dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease LL Zheng, KR Zhou, S Liu, DY Zhang, ZL Wang, ZR Chen, JH Yang, ... Nucleic Acids Research 46 (D1), D85-D91, 2018 | 56 | 2018 |
StarScan: a web server for scanning small RNA targets from degradome sequencing data S Liu, JH Li, J Wu, KR Zhou, H Zhou, JH Yang, LH Qu Nucleic acids research, gkv524, 2015 | 30 | 2015 |
m6A-SAC-seq for quantitative whole transcriptome m6A profiling R Ge, C Ye, Y Peng, Q Dai, Y Zhao, S Liu, P Wang, L Hu, C He Nature protocols 18 (2), 626-657, 2023 | 22 | 2023 |
RBM33 is a unique m6A RNA-binding protein that regulates ALKBH5 demethylase activity and substrate selectivity F Yu, AC Zhu, S Liu, B Gao, Y Wang, N Khudaverdyan, C Yu, Q Wu, ... Molecular Cell 83 (12), 2003-2019. e6, 2023 | 18 | 2023 |
Genome-wide identification of microRNA targets reveals positive regulation of the Hippo pathway by miR-122 during liver development Y Zhang, YY Tan, PP Chen, H Xu, SJ Xie, SJ Xu, B Li, JH Li, S Liu, ... Cell death & disease 12 (12), 1161, 2021 | 15 | 2021 |