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Shun Liu
Shun Liu
在 uchicago.edu 的电子邮件经过验证
标题
引用次数
引用次数
年份
starBase v2. 0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
JH Li, S Liu, H Zhou, LH Qu, JH Yang
Nucleic acids research 42 (Database issue), D92-7, 2014
46262014
RMBase v2. 0: deciphering the map of RNA modifications from epitranscriptome sequencing data
JJ Xuan, WJ Sun, PH Lin, KR Zhou, S Liu, LL Zheng, LH Qu, JH Yang
Nucleic acids research 46 (D1), D327-D334, 2018
3562018
ChIPBase v2. 0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data
KR Zhou, S Liu, WJ Sun, LL Zheng, H Zhou, JH Yang, LH Qu
Nucleic Acids Research 45 (D1), D43-D50, 2017
2652017
deepBase v2. 0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data
LL Zheng, JH Li, J Wu, WJ Sun, S Liu, ZL Wang, H Zhou, JH Yang, LH Qu
Nucleic acids research, gkv1273, 2015
2132015
RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data
WJ Sun, JH Li, S Liu, J Wu, H Zhou, LH Qu, JH Yang
Nucleic acids research, gkv1036, 2015
1882015
m6A RNA modifications are measured at single-base resolution across the mammalian transcriptome
L Hu, S Liu, Y Peng, R Ge, R Su, C Senevirathne, BT Harada, Q Dai, ...
Nature biotechnology 40 (8), 1210-1219, 2022
1712022
RNA demethylation increases the yield and biomass of rice and potato plants in field trials
Q Yu, S Liu, L Yu, Y Xiao, S Zhang, X Wang, Y Xu, H Yu, Y Li, J Yang, ...
Nature Biotechnology 39 (12), 1581-1588, 2021
1432021
tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers
LL Zheng, WL Xu, S Liu, WJ Sun, JH Li, J Wu, JH Yang, LH Qu
Nucleic acids research 44 (W1), W185-W193, 2016
1292016
Stabilization of ERK-phosphorylated METTL3 by USP5 increases m6A methylation
HL Sun, AC Zhu, Y Gao, H Terajima, Q Fei, S Liu, L Zhang, Z Zhang, ...
Molecular cell 80 (4), 633-647. e7, 2020
1102020
Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution
Q Dai, LS Zhang, HL Sun, K Pajdzik, L Yang, C Ye, CW Ju, S Liu, Y Wang, ...
Nature biotechnology 41 (3), 344-354, 2023
1082023
Inhibition of the JNK/MAPK signaling pathway by myogenesis-associated miRNAs is required for skeletal muscle development
SJ Xie, JH Li, HF Chen, YY Tan, SR Liu, Y Zhang, H Xu, JH Yang, S Liu, ...
Cell Death & Differentiation 25 (9), 1581-1597, 2018
1032018
Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination
YL Xiao, S Liu, R Ge, Y Wu, C He, M Chen, W Tang
Nature biotechnology 41 (7), 993-1003, 2023
902023
Discovery of protein–lncRNA interactions by integrating large-scale CLIP-Seq and RNA-Seq datasets
JH Li, S Liu, LL Zheng, J Wu, WJ Sun, ZL Wang, H Zhou, LH Qu, JH Yang
Frontiers in bioengineering and biotechnology 2, 88, 2015
842015
REPIC: a database for exploring the N6-methyladenosine methylome
S Liu, A Zhu, C He, M Chen
Genome biology 21, 1-13, 2020
802020
miR‐372 and miR‐373 enhance the stemness of colorectal cancer cells by repressing differentiation signaling pathways
LQ Wang, P Yu, B Li, YH Guo, ZR Liang, LL Zheng, JH Yang, H Xu, S Liu, ...
Molecular oncology 12 (11), 1949-1964, 2018
662018
dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease
LL Zheng, KR Zhou, S Liu, DY Zhang, ZL Wang, ZR Chen, JH Yang, ...
Nucleic Acids Research 46 (D1), D85-D91, 2018
562018
StarScan: a web server for scanning small RNA targets from degradome sequencing data
S Liu, JH Li, J Wu, KR Zhou, H Zhou, JH Yang, LH Qu
Nucleic acids research, gkv524, 2015
302015
m6A-SAC-seq for quantitative whole transcriptome m6A profiling
R Ge, C Ye, Y Peng, Q Dai, Y Zhao, S Liu, P Wang, L Hu, C He
Nature protocols 18 (2), 626-657, 2023
222023
RBM33 is a unique m6A RNA-binding protein that regulates ALKBH5 demethylase activity and substrate selectivity
F Yu, AC Zhu, S Liu, B Gao, Y Wang, N Khudaverdyan, C Yu, Q Wu, ...
Molecular Cell 83 (12), 2003-2019. e6, 2023
182023
Genome-wide identification of microRNA targets reveals positive regulation of the Hippo pathway by miR-122 during liver development
Y Zhang, YY Tan, PP Chen, H Xu, SJ Xie, SJ Xu, B Li, JH Li, S Liu, ...
Cell death & disease 12 (12), 1161, 2021
152021
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