A statistical approach for distinguishing hybridization and incomplete lineage sorting S Joly, PA McLenachan, PJ Lockhart The American Naturalist 174 (2), E54-E70, 2009 | 440 | 2009 |
Fast Diploidization in Close Mesopolyploid Relatives of Arabidopsis T Mandakova, S Joly, M Krzywinski, K Mummenhoff, MA Lysak The Plant Cell 22 (7), 2277-2290, 2010 | 218 | 2010 |
Increasing phytoremediation efficiency and reliability using novel omics approaches TH Bell, S Joly, FE Pitre, E Yergeau Trends in biotechnology 32 (5), 271-280, 2014 | 194 | 2014 |
Incorporating Allelic Variation for Reconstructing the Evolutionary History of Organisms from Multiple Genes: An Example from Rosa in North America S Joly, A Bruneau Systematic Biology 55 (4), 623-636, 2006 | 187 | 2006 |
Phylogenetic relationships in the genus Rosa: new evidence from chloroplast DNA sequences and an appraisal of current knowledge A Bruneau, JR Starr, S Joly Systematic Botany 32 (2), 366-378, 2007 | 168 | 2007 |
An approach to transcriptome analysis of non-model organisms using short-read sequences LJ Collins, P Biggs, C Voelckel, S Joly Genome Informatics 21, 3-14, 2008 | 162 | 2008 |
Phylogeny and biogeography of wild roses with specific attention to polyploids M Fougère-Danezan, S Joly, A Bruneau, XF Gao, LB Zhang Annals of Botany 115 (2), 275-291, 2015 | 153 | 2015 |
Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead S Joly, TJ Davies, A Archambault, A Bruneau, A Derry, SW Kembel, ... Molecular Ecology Resources 14 (2), 221-232, 2014 | 142 | 2014 |
Polyploid and hybrid evolution in roses east of the Rocky Mountains S Joly, JR Starr, WH Lewis, A Bruneau American Journal of Botany 93 (3), 412-425, 2006 | 141 | 2006 |
JML: testing hybridization from species trees S Joly Molecular Ecology Resources 12 (1), 179-184, 2012 | 122 | 2012 |
An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers (Helianthus) JA Lee‐Yaw, CJ Grassa, S Joly, RL Andrew, LH Rieseberg New Phytologist 221 (1), 515-526, 2019 | 108 | 2019 |
Demographic Signatures Accompanying the Evolution of Selfing in Leavenworthia alabamica JW Busch, S Joly, DJ Schoen Molecular Biology and Evolution 28 (5), 1717-1729, 2011 | 105 | 2011 |
Haplotype networks can be misleading in the presence of missing data S Joly, MI Stevens, BJ van Vuuren Systematic biology 56 (5), 857-862, 2007 | 97 | 2007 |
Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination E Gonzalez, FE Pitre, AP Pagé, J Marleau, W Guidi Nissim, M St-Arnaud, ... Microbiome 6, 1-30, 2018 | 89 | 2018 |
A Pleistocene inter-tribal allopolyploidization event precedes the species radiation of Pachycladon (Brassicaceae) in New Zealand S Joly, PB Heenan, PJ Lockhart Molecular phylogenetics and evolution 51 (2), 365-372, 2009 | 83 | 2009 |
Soil contamination alters the willow root and rhizosphere metatranscriptome and the root–rhizosphere interactome E Yergeau, J Tremblay, S Joly, M Labrecque, C Maynard, FE Pitre, ... The ISME journal 12 (3), 869-884, 2018 | 76 | 2018 |
Evolutionary dynamics and preferential expression of homeologous 18S-5.8 S-26S nuclear ribosomal genes in natural and artificial glycine allopolyploids S Joly, JT Rauscher, SL Sherman-Broyles, AHD Brown, JJ Doyle Molecular Biology and Evolution 21 (7), 1409-1421, 2004 | 64 | 2004 |
Reversing extinction trends: new uses of (old) herbarium specimens to accelerate conservation action on threatened species G Albani Rocchetti, CG Armstrong, T Abeli, S Orsenigo, C Jasper, S Joly, ... New Phytologist 230 (2), 433-450, 2021 | 56 | 2021 |
Evolution and Phylogenetic Diversity of Yam Species (Dioscorea spp.): Implication for Conservation and Agricultural Practices MFS Ngo Ngwe, DN Omokolo, S Joly PLoS one 10 (12), e0145364, 2015 | 55 | 2015 |
Delimiting species boundaries in Rosa sect. Cinnamomeae (Rosaceae) in eastern North America S Joly, A Bruneau Systematic Botany 32 (4), 819-836, 2007 | 50 | 2007 |