| Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics C Rinke, J Lee, N Nath, D Goudeau, B Thompson, N Poulton, E Dmitrieff, ... Nature protocols 9 (5), 1038-1048, 2014 | 269 | 2014 |
| Visualizing in situ translational activity for identifying and sorting slow-growing archaeal− bacterial consortia R Hatzenpichler, SA Connon, D Goudeau, RR Malmstrom, T Woyke, ... Proceedings of the National Academy of Sciences 113 (28), E4069-E4078, 2016 | 166 | 2016 |
| Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs EA Eloe-Fadrosh, D Paez-Espino, J Jarett, PF Dunfield, BP Hedlund, ... Nature communications 7 (1), 10476, 2016 | 146 | 2016 |
| Transcriptome Analysis of Escherichia coli O157:H7 Exposed to Lysates of Lettuce Leaves JL Kyle, CT Parker, D Goudeau, MT Brandl Applied and Environmental Microbiology 76 (5), 1375-1387, 2010 | 129 | 2010 |
| Hidden diversity of soil giant viruses F Schulz, L Alteio, D Goudeau, EM Ryan, FB Yu, RR Malmstrom, ... Nature communications 9 (1), 4881, 2018 | 105 | 2018 |
| The Salmonella transcriptome in lettuce and cilantro soft rot reveals a niche overlap with the animal host intestine DM Goudeau, CT Parker, Y Zhou, S Sela, Y Kroupitski, MT Brandl Applied and environmental microbiology 79 (1), 250-262, 2013 | 104 | 2013 |
| Autoantibody levels in myositis patients correlate with clinical response during B cell depletion with rituximab R Aggarwal, CV Oddis, D Goudeau, D Koontz, Z Qi, AM Reed, ... Rheumatology 55 (6), 991-999, 2016 | 97 | 2016 |
| Probing the active fraction of soil microbiomes using BONCAT-FACS E Couradeau, J Sasse, D Goudeau, N Nath, TC Hazen, BP Bowen, ... Nature communications 10 (1), 2770, 2019 | 86 | 2019 |
| Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea GL Chadwick, CT Skennerton, R Laso-Pérez, AO Leu, DR Speth, H Yu, ... PLoS biology 20 (1), e3001508, 2022 | 50 | 2022 |
| Complementary metagenomic approaches improve reconstruction of microbial diversity in a forest soil LV Alteio, F Schulz, R Seshadri, N Varghese, W Rodriguez-Reillo, E Ryan, ... Msystems 5 (2), e00768-19, 2020 | 39 | 2020 |
| Anti-signal recognition particle autoantibody ELISA validation and clinical associations R Aggarwal, CV Oddis, D Goudeau, N Fertig, I Metes, C Stephens, Z Qi, ... Rheumatology 54 (7), 1194-1199, 2015 | 36 | 2015 |
| A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles JM Volland, S Gonzalez-Rizzo, O Gros, T Tyml, N Ivanova, F Schulz, ... Science 376 (6600), 1453-1458, 2022 | 35 | 2022 |
| A pipeline for targeted metagenomics of environmental bacteria A Grieb, RM Bowers, M Oggerin, D Goudeau, J Lee, RR Malmstrom, ... Microbiome 8 (1), 1-17, 2020 | 32 | 2020 |
| Optimizing de novo genome assembly from PCR-amplified metagenomes S Roux, G Trubl, D Goudeau, N Nath, E Couradeau, NA Ahlgren, Y Zhan, ... PeerJ 7, e6902, 2019 | 24 | 2019 |
| Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions M Berg, D Goudeau, C Olmsted, KD McMahon, S Yitbarek, JL Thweatt, ... The ISME journal 15 (6), 1569-1584, 2021 | 17 | 2021 |
| Anti-transcription intermediary factor 1-gamma autoantibody ELISA development and validation R Aggarwal, CV Oddis, D Goudeau, N Fertig, I Metes, C Stephens, Z Qi, ... Rheumatology 53 (3), 433-437, 2014 | 16 | 2014 |
| Hidden diversity of soil giant viruses. Nat Commun 9: 4881 F Schulz, L Alteio, D Goudeau, EM Ryan, FB Yu, RR Malmstrom, ... | 13 | 2018 |
| Probing the active fraction of soil microbiomes using BONCAT-FACS. Nat Commun 10: 2770 E Couradeau, J Sasse, D Goudeau, N Nath, TC Hazen, BP Bowen, ... | 12 | 2019 |
| Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane LJ McKay, HJ Smith, EP Barnhart, HD Schweitzer, RR Malmstrom, ... The ISME journal 16 (4), 915-926, 2022 | 11 | 2022 |
| Subsurface hydrocarbon degradation strategies in low-and high-sulfate coal seam communities identified with activity-based metagenomics HD Schweitzer, HJ Smith, EP Barnhart, LJ McKay, R Gerlach, ... npj Biofilms and Microbiomes 8 (1), 7, 2022 | 11 | 2022 |
