DNA: an extensible molecule P Cluzel, A Lebrun, C Heller, R Lavery, JL Viovy, D Chatenay, F Caron Science 271 (5250), 792-794, 1996 | 1320 | 1996 |
The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids R Lavery, H Sklenar Journal of Biomolecular Structure and Dynamics 6 (1), 63-91, 1988 | 1096 | 1988 |
Defining the structure of irregular nucleic acids: conventions and principles R Lavery, H Sklenar Journal of Biomolecular Structure and Dynamics 6 (4), 655-667, 1989 | 877 | 1989 |
Conformational analysis of nucleic acids revisited: Curves+ R Lavery, M Moakher, JH Maddocks, D Petkeviciute, K Zakrzewska Nucleic acids research 37 (17), 5917-5929, 2009 | 720 | 2009 |
Stretched and overwound DNA forms a Pauling-like structure with exposed bases JF Allemand, D Bensimon, R Lavery, V Croquette Proceedings of the National Academy of Sciences 95 (24), 14152-14157, 1998 | 478 | 1998 |
A new approach to the rapid determination of protein side chain conformations P Tuffery, C Etchebest, S Hazout, R Lavery Journal of Biomolecular structure and dynamics 8 (6), 1267-1289, 1991 | 444 | 1991 |
Energetic coupling between DNA bending and base pair opening. J Ramstein, R Lavery Proceedings of the National Academy of Sciences 85 (19), 7231-7235, 1988 | 390 | 1988 |
A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA R Lavery, K Zakrzewska, D Beveridge, TC Bishop, DA Case, ... Nucleic acids research 38 (1), 299-313, 2010 | 335 | 2010 |
Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d (CGCGAATTCGCG) double helix:“curves”, dials and windows G Ravishanker, S Swaminathan, DL Beveridge, R Lavery, H Sklenar Journal of Biomolecular Structure and Dynamics 6 (4), 669-699, 1989 | 315 | 1989 |
Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d (CpG) steps DL Beveridge, G Barreiro, KS Byun, DA Case, TE Cheatham, SB Dixit, ... Biophysical journal 87 (6), 3799-3813, 2004 | 308 | 2004 |
Modelling extreme stretching of DNA A Lebrun, R Lavery Nucleic acids research 24 (12), 2260-2267, 1996 | 280 | 1996 |
Structure and dynamics of a 197 bp nucleosome in complex with linker histone H1 J Bednar, I Garcia-Saez, R Boopathi, AR Cutter, G Papai, A Reymer, ... Molecular cell 66 (3), 384-397. e8, 2017 | 263 | 2017 |
Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique … SB Dixit, DL Beveridge, DA Case, TE Cheatham, E Giudice, F Lankas, ... Biophysical journal 89 (6), 3721-3740, 2005 | 262 | 2005 |
JUMNA (junction minimisation of nucleic acids) R Lavery, K Zakrzewska, H Sklenar Computer Physics Communications 91 (1-3), 135-158, 1995 | 227 | 1995 |
CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures C Blanchet, M Pasi, K Zakrzewska, R Lavery Nucleic acids research 39 (suppl_2), W68-W73, 2011 | 209 | 2011 |
Methylene blue binding to DNA with alternating GC base sequence: a modeling study R Rohs, H Sklenar, R Lavery, B Röder Journal of the American Chemical Society 122 (12), 2860-2866, 2000 | 205 | 2000 |
On the molecular mechanism of drug intercalation into DNA: a simulation study of the intercalation pathway, free energy, and DNA structural changes A Mukherjee, R Lavery, B Bagchi, JT Hynes Journal of the American Chemical Society 130 (30), 9747-9755, 2008 | 202 | 2008 |
The flexibility of the nucleic acids:(II) The calculation of internal energy and applications to mononucleotide repeat DNA R Lavery, H Sklenar, K Zakrzewska, B Pullman Journal of Biomolecular Structure and Dynamics 3 (5), 989-1014, 1986 | 202 | 1986 |
μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA M Pasi, JH Maddocks, D Beveridge, TC Bishop, DA Case, T Cheatham III, ... Nucleic acids research 42 (19), 12272-12283, 2014 | 192 | 2014 |
Base pair opening within B‐DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations E Giudice, P Várnai, R Lavery Nucleic acids research 31 (5), 1434-1443, 2003 | 187 | 2003 |