DeepRank: a deep learning framework for data mining 3D protein-protein interfaces N Renaud, C Geng, S Georgievska, F Ambrosetti, L Ridder, DF Marzella, ... Nature communications 12 (1), 7068, 2021 | 73 | 2021 |
PANDORA: a fast, anchor-restrained modelling protocol for peptide: MHC complexes DF Marzella, FM Parizi, D Tilborg, N Renaud, D Sybrandi, R Buzatu, ... Frontiers in Immunology 13, 878762, 2022 | 20 | 2022 |
PANDORA v2. 0: Benchmarking peptide-MHC II models and software improvements FM Parizi, DF Marzella, G Ramakrishnan, PAC ‘t Hoen, MH Karimi-Jafari, ... Frontiers in Immunology 14, 1285899, 2023 | 4 | 2023 |
DeepRank2: Mining 3D Protein Structures with Geometric Deep Learning G Crocioni, DL Bodor, C Baakman, FM Parizi, DT Rademaker, ... Journal of Open Source Software 9 (94), 5983, 2024 | 1 | 2024 |
The PANDORA software for anchor-restrained peptide: MHC modeling DF Marzella, G Crocioni, FM Parizi, LC Xue Computational Vaccine Design, 251-271, 2023 | 1 | 2023 |
Improving generalizability and data efficiency for MHC-I binding peptide predictions through structure-based geometric deep learning L Xue, D Marzella, G Crocioni, T Radusinović, D Lepikhov, H Severin, ... | | 2024 |
Improving generalizability for MHC-I binding peptide predictions through geometric deep learning DF Marzella, G Crocioni, T Radusinović, D Lepikhov, H Severin, DL Bodor, ... bioRxiv, 2023.12. 04.569776, 2023 | | 2023 |