Structural cells are key regulators of organ-specific immune responses T Krausgruber, N Fortelny, V Fife-Gernedl, M Senekowitsch, LC Schuster, ... Nature 583 (7815), 296-302, 2020 | 338 | 2020 |
The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space J Klughammer, B Kiesel, T Roetzer, N Fortelny, A Nemc, KH Nenning, ... Nature medicine 24 (10), 1611-1624, 2018 | 262 | 2018 |
Can we predict protein from mRNA levels? N Fortelny, CM Overall, P Pavlidis, GVC Freue Nature 547 (7664), E19-E20, 2017 | 219 | 2017 |
Network analyses reveal pervasive functional regulation between proteases in the human protease web N Fortelny, JH Cox, R Kappelhoff, AE Starr, PF Lange, P Pavlidis, ... PLoS biology 12 (5), e1001869, 2014 | 177 | 2014 |
Single-cell RNA sequencing analysis reveals a crucial role for CTHRC1 (collagen triple helix repeat containing 1) cardiac fibroblasts after myocardial infarction A Ruiz-Villalba, JP Romero, SC Hernández, A Vilas-Zornoza, N Fortelny, ... Circulation 142 (19), 1831-1847, 2020 | 167 | 2020 |
Single-cell transcriptomics combined with interstitial fluid proteomics defines cell type–specific immune regulation in atopic dermatitis TB Rojahn, V Vorstandlechner, T Krausgruber, WM Bauer, N Alkon, ... Journal of Allergy and Clinical Immunology 146 (5), 1056-1069, 2020 | 131 | 2020 |
Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre-and post-translational events N Fortelny, S Yang, P Pavlidis, PF Lange, CM Overall Nucleic acids research 43 (D1), D290-D297, 2015 | 127 | 2015 |
Persistence of mature dendritic cells, TH2A, and Tc2 cells characterize clinically resolved atopic dermatitis under IL-4Rα blockade C Bangert, K Rindler, T Krausgruber, N Alkon, FM Thaler, H Kurz, T Ayub, ... Science immunology 6 (55), eabe2749, 2021 | 95 | 2021 |
Chromatin mapping and single-cell immune profiling define the temporal dynamics of ibrutinib response in CLL AF Rendeiro, T Krausgruber, N Fortelny, F Zhao, T Penz, M Farlik, ... Nature Communications 11 (1), 577, 2020 | 86 | 2020 |
Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data N Fortelny, C Bock Genome biology 21, 1-36, 2020 | 83 | 2020 |
TAILS N-terminomics and proteomics show protein degradation dominates over proteolytic processing by cathepsins in pancreatic tumors A Prudova, V Gocheva, U Auf dem Keller, U Eckhard, OC Olson, L Akkari, ... Cell reports 16 (6), 1762-1773, 2016 | 78 | 2016 |
C-terminal truncation of IFN-γ inhibits proinflammatory macrophage responses and is deficient in autoimmune disease A Dufour, CL Bellac, U Eckhard, N Solis, T Klein, R Kappelhoff, N Fortelny, ... Nature Communications 9 (1), 2416, 2018 | 73 | 2018 |
TAILS N-terminomics of human platelets reveals pervasive metalloproteinase-dependent proteolytic processing in storage A Prudova, K Serrano, U Eckhard, N Fortelny, DV Devine, CM Overall Blood, The Journal of the American Society of Hematology 124 (26), e49-e60, 2014 | 67 | 2014 |
Interactome disassembly during apoptosis occurs independent of caspase cleavage NE Scott, LD Rogers, A Prudova, NF Brown, N Fortelny, CM Overall, ... Molecular Systems Biology 13 (1), 906, 2017 | 56 | 2017 |
The path of no return—Truncated protein N‐termini and current ignorance of their genesis N Fortelny, P Pavlidis, CM Overall Proteomics 15 (14), 2547-2552, 2015 | 53 | 2015 |
Epigenomics and single-cell sequencing define a developmental hierarchy in Langerhans cell histiocytosis F Halbritter, M Farlik, R Schwentner, G Jug, N Fortelny, T Schnöller, ... Cancer discovery 9 (10), 1406-1421, 2019 | 48 | 2019 |
Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets B Marquina-Sanchez, N Fortelny, M Farlik, A Vieira, P Collombat, C Bock, ... Genome biology 21, 1-22, 2020 | 42 | 2020 |
Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species J Klughammer, D Romanovskaia, A Nemc, A Posautz, CA Seid, ... Nature Communications 14 (1), 232, 2023 | 32 | 2023 |
Distributed changes of the functional connectome in patients with glioblastoma KH Nenning, J Furtner, B Kiesel, E Schwartz, T Roetzer, N Fortelny, ... Scientific reports 10 (1), 18312, 2020 | 28 | 2020 |
Spontaneously resolved atopic dermatitis shows melanocyte and immune cell activation distinct from healthy control skin K Rindler, T Krausgruber, FM Thaler, N Alkon, C Bangert, H Kurz, ... Frontiers in immunology 12, 630892, 2021 | 25 | 2021 |