RDP4: Detection and analysis of recombination patterns in virus genomes DP Martin, B Murrell, M Golden, A Khoosal, B Muhire Virus evolution 1 (1), vev003, 2015 | 2977 | 2015 |
Detection of a SARS-CoV-2 variant of concern in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592, 438 - 443, 2021 | 2719* | 2021 |
RDP3: a flexible and fast computer program for analyzing recombination DP Martin, P Lemey, M Lott, V Moulton, D Posada, P Lefeuvre Bioinformatics 26 (19), 2462-2463, 2010 | 1834 | 2010 |
RDP: detection of recombination amongst aligned sequences D Martin, E Rybicki Bioinformatics 16 (6), 562-563, 2000 | 1584 | 2000 |
SDT: a virus classification tool based on pairwise sequence alignment and identity calculation BM Muhire, A Varsani, DP Martin PloS one 9 (9), e108277, 2014 | 1516 | 2014 |
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022 | 1446 | 2022 |
RDP2: recombination detection and analysis from sequence alignments DP Martin, C Williamson, D Posada Bioinformatics 21 (2), 260-262, 2005 | 1083 | 2005 |
A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints DP Martin, D Posada, KA Crandall, C Williamson Microbiology 11 (5), 2005 | 890 | 2005 |
Altered TMPRSS2 usage by SARS-CoV-2 Omicron impacts infectivity and fusogenicity B Meng, A Abdullahi, IATM Ferreira, N Goonawardane, A Saito, I Kimura, ... Nature 603 (7902), 706-714, 2022 | 882 | 2022 |
ICTV Virus Taxonomy Profile: Geminiviridae FM Zerbini, RW Briddon, A Idris, DP Martin, E Moriones, J Navas-Castillo, ... Journal of general virology 98 (2), 131-133, 2017 | 853 | 2017 |
Revision of Begomovirus taxonomy based on pairwise sequence comparisons JK Brown, FM Zerbini, J Navas-Castillo, E Moriones, R Ramos-Sobrinho, ... Archives of virology 160, 1593-1619, 2015 | 807 | 2015 |
The phylogenetic handbook: a practical approach to phylogenetic analysis and hypothesis testing AMV M Salemi, P Lemey The phylogenetic handbook, 2009 | 785* | 2009 |
Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... Nature medicine 28 (9), 1785-1790, 2022 | 623* | 2022 |
Gene-wide identification of episodic selection B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ... Molecular biology and evolution 32 (5), 1365-1371, 2015 | 501 | 2015 |
Plant virus metagenomics: advances in virus discovery MJ Roossinck, DP Martin, P Roumagnac Phytopathology 105 (6), 716-727, 2015 | 407 | 2015 |
Enabling the genomic revolution in Africa THA Consortium Science 344 (6190), 1346-1348, 2014 | 394* | 2014 |
Sixteen novel lineages of SARS-CoV-2 in South Africa H Tegally, E Wilkinson, RJ Lessells, J Giandhari, S Pillay, N Msomi, ... Nature medicine 27, 440 - 446, 2021 | 391 | 2021 |
The spread of tomato yellow leaf curl virus from the Middle East to the world P Lefeuvre, DP Martin, G Harkins, P Lemey, AJA Gray, S Meredith, ... PLoS pathogens 6 (10), e1001164, 2010 | 353 | 2010 |
A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae) B Muhire, DP Martin, JK Brown, J Navas-Castillo, E Moriones, FM Zerbini, ... Archives of virology 158, 1411-1424, 2013 | 337 | 2013 |
RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets DP Martin, A Varsani, P Roumagnac, G Botha, S Maslamoney, T Schwab, ... Virus Evolution 7 (1), veaa087, 2021 | 326 | 2021 |