DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines JT Bell, AA Pai, JK Pickrell, DJ Gaffney, R Pique-Regi, JF Degner, Y Gilad, ... Genome biology 12, 1-13, 2011 | 1002 | 2011 |
DNase I sensitivity QTLs are a major determinant of human expression variation JF Degner, AA Pai, R Pique-Regi, JB Veyrieras, DJ Gaffney, JK Pickrell, ... Nature 482 (7385), 390-394, 2012 | 797 | 2012 |
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data R Pique-Regi, JF Degner, AA Pai, DJ Gaffney, Y Gilad, JK Pritchard Genome research 21 (3), 447-455, 2011 | 657 | 2011 |
DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina JM Zullo, IA Demarco, R Piqué-Regi, DJ Gaffney, CB Epstein, CJ Spooner, ... Cell 149 (7), 1474-1487, 2012 | 489 | 2012 |
Genetic ancestry and natural selection drive population differences in immune responses to pathogens Y Nédélec, J Sanz, G Baharian, ZA Szpiech, A Pacis, A Dumaine, ... Cell 167 (3), 657-669. e21, 2016 | 479 | 2016 |
Does the human placenta express the canonical cell entry mediators for SARS-CoV-2? R Pique-Regi, R Romero, AL Tarca, F Luca, Y Xu, A Alazizi, Y Leng, ... Elife 9, e58716, 2020 | 300 | 2020 |
Clinical significance of tumor-associated inflammatory cells in metastatic neuroblastoma S Asgharzadeh, JA Salo, L Ji, A Oberthuer, M Fischer, F Berthold, ... Journal of Clinical Oncology 30 (28), 3525-3532, 2012 | 297 | 2012 |
Social status alters immune regulation and response to infection in macaques N Snyder-Mackler, J Sanz, JN Kohn, JF Brinkworth, S Morrow, AO Shaver, ... Science 354 (6315), 1041-1045, 2016 | 294 | 2016 |
Deconstructing adipogenesis induced by β3-adrenergic receptor activation with single-cell expression profiling RB Burl, VD Ramseyer, EA Rondini, R Pique-Regi, YH Lee, ... Cell metabolism 28 (2), 300-309. e4, 2018 | 290 | 2018 |
Integrating molecular QTL data into genome-wide genetic association analysis: Probabilistic assessment of enrichment and colocalization X Wen, R Pique-Regi, F Luca PLoS genetics 13 (3), e1006646, 2017 | 264 | 2017 |
Prognostic significance of gene expression profiles of metastatic neuroblastomas lacking MYCN gene amplification S Asgharzadeh, R Pique-Regi, R Sposto, H Wang, Y Yang, H Shimada, ... Journal of the National Cancer Institute 98 (17), 1193-1203, 2006 | 254 | 2006 |
Dissecting the regulatory architecture of gene expression QTLs DJ Gaffney, JB Veyrieras, JF Degner, PR Roger, AA Pai, GE Crawford, ... Genome Biology 13 (1), R7, 2012 | 245 | 2012 |
Bacterial infection remodels the DNA methylation landscape of human dendritic cells A Pacis, L Tailleux, AM Morin, J Lambourne, JL MacIsaac, V Yotova, ... Genome research 25 (12), 1801-1811, 2015 | 238 | 2015 |
Single cell transcriptional signatures of the human placenta in term and preterm parturition R Pique-Regi, R Romero, AL Tarca, ED Sendler, Y Xu, V Garcia-Flores, ... Elife 8, e52004, 2019 | 232 | 2019 |
Causal relationships between NAFLD, T2D and obesity have implications for disease subphenotyping Z Liu, Y Zhang, S Graham, X Wang, D Cai, M Huang, R Pique-Regi, ... Journal of hepatology 73 (2), 263-276, 2020 | 185 | 2020 |
Sparse representation and Bayesian detection of genome copy number alterations from microarray data R Pique-Regi, J Monso-Varona, A Ortega, RC Seeger, TJ Triche, ... Bioinformatics 24 (3), 309-318, 2008 | 162 | 2008 |
Maternal-fetal immune responses in pregnant women infected with SARS-CoV-2 V Garcia-Flores, R Romero, Y Xu, KR Theis, M Arenas-Hernandez, ... Nature communications 13 (1), 320, 2022 | 160 | 2022 |
Efficient integrative multi-SNP association analysis via deterministic approximation of posteriors X Wen, Y Lee, F Luca, R Pique-Regi The American Journal of Human Genetics 98 (6), 1114-1129, 2016 | 156 | 2016 |
High-throughput allele-specific expression across 250 environmental conditions GA Moyerbrailean, AL Richards, D Kurtz, CA Kalita, GO Davis, CT Harvey, ... Genome research 26 (12), 1627-1638, 2016 | 117 | 2016 |
QuASAR: quantitative allele-specific analysis of reads CT Harvey, GA Moyerbrailean, GO Davis, X Wen, F Luca, R Pique-Regi Bioinformatics 31 (8), 1235-1242, 2015 | 112 | 2015 |