| JBrowse: a dynamic web platform for genome visualization and analysis R Buels, E Yao, CM Diesh, RD Hayes, M Munoz-Torres, G Helt, ... Genome biology 17, 1-12, 2016 | 731 | 2016 |
| Apollo: democratizing genome annotation NA Dunn, DR Unni, C Diesh, M Munoz-Torres, NL Harris, E Yao, ... PLoS computational biology 15 (2), e1006790, 2019 | 201 | 2019 |
| JBrowse 2: a modular genome browser with views of synteny and structural variation C Diesh, GJ Stevens, P Xie, T De Jesus Martinez, EA Hershberg, A Leung, ... Genome biology 24 (1), 74, 2023 | 166 | 2023 |
| Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine CG Elsik, A Tayal, CM Diesh, DR Unni, ML Emery, HN Nguyen, ... Nucleic acids research 44 (D1), D793-D800, 2016 | 131 | 2016 |
| Bovine Genome Database: new tools for gleaning function from the Bos taurus genome CG Elsik, DR Unni, CM Diesh, A Tayal, ML Emery, HN Nguyen, ... Nucleic acids research 44 (D1), D834-D839, 2016 | 113 | 2016 |
| CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing M Suvakov, A Panda, C Diesh, I Holmes, A Abyzov Gigascience 10 (11), giab074, 2021 | 56 | 2021 |
| WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata TE Putman, S Lelong, S Burgstaller-Muehlbacher, A Waagmeester, ... Database 2017, bax025, 2017 | 44 | 2017 |
| Bovine Genome Database: new annotation tools for a new reference genome M Shamimuzzaman, JJ Le Tourneau, DR Unni, CM Diesh, DA Triant, ... Nucleic acids research 48 (D1), D676-D681, 2020 | 31 | 2020 |
| JBrowseR: an R interface to the JBrowse 2 genome browser EA Hershberg, G Stevens, C Diesh, P Xie, T De Jesus Martinez, R Buels, ... Bioinformatics 37 (21), 3914-3915, 2021 | 13 | 2021 |
| CNVpytor: a tool for CNV/CNA detection and analysis from read depth and allele imbalance in whole genome sequencing M Suvakov, A Panda, C Diesh, I Holmes, A Abyzov bioRxiv, 2021.01. 27.428472, 2021 | 7 | 2021 |
| JBrowse jupyter: a Python interface to JBrowse 2 T De Jesus Martinez, EA Hershberg, E Guo, GJ Stevens, C Diesh, P Xie, ... Bioinformatics 39 (1), btad032, 2023 | 3 | 2023 |
| Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome DA Triant, JJ Le Tourneau, CM Diesh, DR Unni, M Shamimuzzaman, ... Animal Genetics 51 (5), 675-682, 2020 | 3 | 2020 |
| Cram-JS: reference-based decompression in node and the browser R Buels, S Dider, C Diesh, J Robinson, I Holmes Bioinformatics 35 (21), 4451-4452, 2019 | 2 | 2019 |
| JBrowse 2: An extensible open-source platform for modern genome analysis S Cain, R Haw, C Bridge, J Zhang, R Buels, C Diesh, G Stevens, ... Cancer Research 82 (12_Supplement), 6400-6400, 2022 | 1 | 2022 |
| BovineMine: A bovine genome data mining warehouse CG Elsik, DR Unni, A Tayal, CM Diesh, DE Hagen Journal of Animal Science 94, 33-33, 2016 | 1 | 2016 |
| The fifth international hackathon for developing computational cloud-based tools and resources for pan-structural variation and genomics SK Deb, D Kalra, J Kubica, E Stricker, VQ Truong, Q Zeng, CJ Fiscus, ... F1000Research 13, 708, 2024 | | 2024 |
| Abstract LB503: Using JBrowse 2 plugins to visualize cancer genomic data RA Haw, C Diesh, C Bridge, R Buels, G Stevens, P Xie, T Martinez, ... Cancer Research 82 (12_Supplement), LB503-LB503, 2022 | | 2022 |
| Methods developed during the first National Center for Biotechnology Information Structural Variation Codeathon at Baylor College of Medicine M Mahmoud, AR Gener, MM Khayat, AC English, A Balaji, A Zhou, ... F1000Research 9 (1141), 1141, 2020 | | 2020 |
| JBrowse: a dynamic web platform for genome visualization and analysis IH Holmes, R Buels, E Yao, CM Diesh, RD Hayes, M Munoz-Torres, ... | | 2016 |
| JBrowse 2: A Desktop and Web Based Genome Browser for Structural Variant and Comparative Genomics Analysis C Diesh, G Stevens, PK Xie, T Martinez, R Buels, C Bridge, E Hershberg, ... Plant and Animal Genome XXIX Conference (January 8-12, 2022), 0 | | |
