NAMD2: greater scalability for parallel molecular dynamics L Kalé, R Skeel, M Bhandarkar, R Brunner, A Gursoy, N Krawetz, ... Journal of Computational Physics 151 (1), 283-312, 1999 | 2990 | 1999 |
namd User’s Guide M Bhandarkar, R Brunner, C Chipot, A Dalke, S Dixit, P Grayson, ... Urbana 51, 61801, 2003 | 64 | 2003 |
Handling application-induced load imbalance using parallel objects RK Brunner, LV Kalé Parallel and Distributed Computing for Symbolic and Irregular Applications …, 2000 | 61 | 2000 |
Run-time support for adaptive load balancing MA Bhandarkar, RK Brunner, LV Kalé Parallel and Distributed Processing: 15 IPDPS 2000 Workshops Cancun, Mexico …, 2000 | 55 | 2000 |
NAMD: A case study in multilingual parallel programming LV Kalé, M Bhandarkar, R Brunner, N Krawetz, J Phillips, A Shinozaki Languages and Compilers for Parallel Computing: 10th International Workshop …, 1998 | 53 | 1998 |
Modeling transport through synthetic nanopores A Aksimentiev, RK Brunner, E Cruz-Chu, J Comer, K Schulten IEEE nanotechnology magazine 3 (1), 20-28, 2009 | 52 | 2009 |
Load balancing in parallel molecular dynamics LV Kalé, M Bhandarkar, R Brunner Solving Irregularly Structured Problems in Parallel: 5th International …, 1998 | 50 | 1998 |
Adapting to load on workstation clusters RK Brunner, LV Kalé Proceedings. Frontiers' 99. Seventh Symposium on the Frontiers of Massively …, 1999 | 46 | 1999 |
NAMD user’s guide version 2.5 M Bhandarkar, R Brunner, C Chipot, A Dalke, S Dixit, P Grayson, ... Theoretical biophysics group, University of Illinois and Beckman Institute 405, 2009 | 40 | 2009 |
Computer Modeling in Biotechnology: A Partner in Development A Aksimentiev, R Brunner, J Cohen, J Comer, E Cruz-Chu, D Hardy, ... Nanostructure Design: Methods and Protocols, 181-234, 2008 | 37 | 2008 |
Scalable molecular dynamics for large biomolecular systems RK Brunner, JC Phillips, LV Kalé Scientific Programming 8 (3), 195-207, 2000 | 36 | 2000 |
Workload analysis of blue waters MD Jones, JP White, M Innus, RL DeLeon, N Simakov, JT Palmer, ... arXiv preprint arXiv:1703.00924, 2017 | 28 | 2017 |
Multiparadigm, multilingual interoperability: Experience with converse LV Kalé, M Bhandarkar, R Brunner, J Yelon Parallel and Distributed Processing: 10 IPPS/SPDP'98 Workshops Held in …, 1998 | 27 | 1998 |
Topology-aware job scheduling strategies for torus networks J Enos, G Bauer, R Brunner, S Islam, RA Fiedler, M Steed, D Jackson Proceedings of the Cray User Group, 2014 | 25 | 2014 |
Avoiding algorithmic obfuscation in a message-driven parallel MD code JC Phillips, R Brunner, A Shinozaki, M Bhandarkar, N Krawetz, A Gursoy, ... Computational Molecular Dynamics: Challenges, Methods, Ideas: Proceedings of …, 1999 | 15 | 1999 |
Challenges of workload analysis on large HPC systems: A case study on NCSA blue waters JP White, M Innus, MD Jones, RL DeLeon, N Simakov, JT Palmer, ... Proceedings of the Practice and Experience in Advanced Research Computing …, 2017 | 7 | 2017 |
Updating the SPP benchmark suite for extreme-scale systems G Bauer, V Anisimov, G Arnold, B Bode, R Brunner, T Cortese, R Haas, ... Proceedings of Cry User Group Meeting (CUG-2017), 2017 | 7 | 2017 |
Application performance of a Linux cluster using Converse L Kałé, R Brunner, J Phillips, K Varadarajan Parallel and Distributed Processing: 11th IPPS/SPDP’99 Workshops Held in …, 1999 | 6 | 1999 |
Branch and bound based load balancing for parallel applications S Radhakrishnan, RK Brunner, LV Kalé Computing in Object-Oriented Parallel Environments: Third International …, 1999 | 4 | 1999 |
NAMD Programming Guide R Brunner, A Dalke, A Gursoy, W Humphrey, M Nelson University of Illinois and Beckman Institute, v1, 1998 | 3 | 1998 |