The open gate structure of the membrane-embedded KcsA potassium channel viewed from the cytoplasmic side A Sumino, T Sumikama, M Iwamoto, T Dewa, S Oiki Scientific reports 3 (1), 1063, 2013 | 36 | 2013 |
Mechanism of Ion Permeation in a Model Channel: Free Energy Surface and Dynamics of K+ Ion Transport in an Anion-Doped Carbon Nanotube T Sumikama, S Saito, I Ohmine The Journal of Physical Chemistry B 110 (41), 20671-20677, 2006 | 34 | 2006 |
Digitalized K+ Occupancy in the Nanocavity Holds and Releases Queues of K+ in a Channel T Sumikama, S Oiki Journal of the American Chemical Society 138 (32), 10284-10292, 2016 | 26 | 2016 |
Conductance selectivity of Na+ across the K+ channel via Na+ trapped in a tortuous trajectory K Mita, T Sumikama, M Iwamoto, Y Matsuki, K Shigemi, S Oiki Proceedings of the National Academy of Sciences 118 (12), e2017168118, 2021 | 24 | 2021 |
High-speed AFM reveals accelerated binding of agitoxin-2 to a K+ channel by induced fit A Sumino, T Sumikama, T Uchihashi, S Oiki Science Advances 5 (7), eaax0495, 2019 | 23 | 2019 |
Capturing the freeze-drying dynamics of NaCl nanoparticles using THz spectroscopy K Ajito, Y Ueno, JY Kim, T Sumikama Journal of the American Chemical Society 140 (42), 13793-13797, 2018 | 18 | 2018 |
Cycle flux algebra for ion and water flux through the KcsA channel single-file pore links microscopic trajectories and macroscopic observables S Oiki, M Iwamoto, T Sumikama PloS one 6 (1), e16578, 2011 | 17 | 2011 |
Queueing arrival and release mechanism for K+ permeation through a potassium channel T Sumikama, S Oiki The Journal of Physiological Sciences 69, 919-930, 2019 | 16 | 2019 |
Mechanism of ion permeation through a model channel: Roles of energetic and entropic contributions T Sumikama, S Saito, I Ohmine The Journal of Chemical Physics 139 (16), 2013 | 13 | 2013 |
A mesoscopic approach to understanding the mechanisms underlying the ion permeation on the discrete-state diagram S Oiki, M Iwamoto, T Sumikama Journal of General Physiology 136 (3), 363-365, 2010 | 10 | 2010 |
Structure and dynamics of solvent molecules inside the polytheonamide B channel in different environments: a molecular dynamics study M Kalathingal, T Sumikama, T Mori, S Oiki, S Saito Physical Chemistry Chemical Physics 20 (5), 3334-3348, 2018 | 9 | 2018 |
Origin of the shape of current-voltage curve through nanopores: A molecular dynamics study T Sumikama Scientific Reports 6 (1), 25750, 2016 | 9 | 2016 |
Computed atomic force microscopy images of chromosomes by calculating forces with oscillating probes T Sumikama, AS Foster, T Fukuma The Journal of Physical Chemistry C 124 (3), 2213-2218, 2019 | 6 | 2019 |
Imaging single CaMKII holoenzymes at work by high-speed atomic force microscopy S Tsujioka, A Sumino, Y Nagasawa, T Sumikama, H Flechsig, L Puppulin, ... Science Advances 9 (26), eadh1069, 2023 | 5 | 2023 |
Computed three-dimensional atomic force microscopy images of biopolymers using the Jarzynski equality T Sumikama, F Federici Canova, DZ Gao, M Penedo, K Miyazawa, ... The Journal of Physical Chemistry Letters 13 (23), 5365-5371, 2022 | 5 | 2022 |
Voltage sensors of a Na+ channel dissociate from the pore domain and form inter-channel dimers in the resting state A Sumino, T Sumikama, M Shibata, K Irie Nature Communications 14 (1), 7835, 2023 | 3 | 2023 |
Computation of topographic and three-dimensional atomic force microscopy images of biopolymers by calculating forces T Sumikama Biophysical Reviews 15 (6), 2059-2064, 2023 | 3 | 2023 |
Vectorial insertion of a β-helical peptide into membrane: a theoretical study on polytheonamide B M Kalathingal, T Sumikama, S Oiki, S Saito Biophysical Journal 120 (21), 4786-4797, 2021 | 3 | 2021 |
The structural basis of divalent cation block in a tetrameric prokaryotic sodium channel K Irie, Y Oda, T Sumikama, A Oshima, Y Fujiyoshi Nature Communications 14 (1), 4236, 2023 | 2 | 2023 |
Biophysical Reviews Issue Focus call: Computational biophysics of atomic force microscopy T Sumikama, D Hall, H Flechsig Biophysical Reviews 15 (1), 17-18, 2023 | 2 | 2023 |