| Application of next generation sequencing in clinical microbiology and infection prevention RH Deurenberg, E Bathoorn, MA Chlebowicz, N Couto, M Ferdous, ... Journal of biotechnology 243, 16-24, 2017 | 587 | 2017 |
| Diagnosis of bloodstream infections from positive blood cultures and directly from blood samples: recent developments in molecular approaches N Peker, N Couto, B Sinha, JW Rossen Clinical Microbiology and Infection 24 (9), 944-955, 2018 | 214 | 2018 |
| Trends and molecular mechanisms of antimicrobial resistance in clinical staphylococci isolated from companion animals over a 16 year period N Couto, C Monchique, A Belas, C Marques, LT Gama, C Pomba Journal of Antimicrobial Chemotherapy 71 (6), 1479-1487, 2016 | 128 | 2016 |
| Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae S David, V Cohen, S Reuter, AE Sheppard, T Giani, J Parkhill, ... Proceedings of the National Academy of Sciences 117 (40), 25043-25054, 2020 | 122 | 2020 |
| Evaluation of antimicrobial resistance and virulence of enterococci from equipment surfaces, raw materials, and traditional cheeses R Gaglio, N Couto, C Marques, MFS Lopes, G Moschetti, C Pomba, ... International Journal of Food Microbiology 236, 107-114, 2016 | 115 | 2016 |
| One Health drivers of antibacterial resistance: quantifying the relative impacts of human, animal and environmental use and transmission RD Booton, A Meeyai, N Alhusein, H Buller, E Feil, H Lambert, ... One Health 12, 100220, 2021 | 83 | 2021 |
| Risk factors for faecal colonisation with Escherichia coli producing extended‐spectrum and plasmid‐mediated AmpC β‐lactamases in dogs A Belas, AS Salazar, LT Gama, N Couto, C Pomba Veterinary Record 175 (8), 202-202, 2014 | 77 | 2014 |
| First report of OXA-23-mediated carbapenem resistance in sequence type 2 multidrug-resistant Acinetobacter baumannii associated with urinary tract infection in a cat C Pomba, A Endimiani, A Rossano, D Saial, N Couto, V Perreten Antimicrobial agents and chemotherapy 58 (2), 1267-1268, 2014 | 74 | 2014 |
| Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens N Couto, L Schuele, EC Raangs, MP Machado, CI Mendes, TF Jesus, ... Scientific reports 8 (1), 13767, 2018 | 72 | 2018 |
| Small plasmids carrying vga (A) or vga (C) genes mediate resistance to lincosamides, pleuromutilins and streptogramin A antibiotics in methicillin-resistant Staphylococcus … K Kadlec, CF Pomba, N Couto, S Schwarz Journal of antimicrobial chemotherapy 65 (12), 2692-2693, 2010 | 71 | 2010 |
| A comparison of three different bioinformatics analyses of the 16S–23S rRNA encoding region for bacterial identification N Peker, S Garcia-Croes, B Dijkhuizen, HH Wiersma, E van Zanten, ... Frontiers in microbiology 10, 620, 2019 | 70 | 2019 |
| Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure FX López-Labrador, JR Brown, N Fischer, H Harvala, S Van Boheemen, ... Journal of Clinical Virology 134, 104691, 2021 | 64 | 2021 |
| Prevalence of meticillin-resistant staphylococci among dogs and cats at a veterinary teaching hospital in Portugal N Couto, C Pomba, A Moodley, L Guardabassi The Veterinary Record 169 (3), 72, 2011 | 63 | 2011 |
| Characterization of Staphylococcus pseudintermedius isolated from diseased dogs in Lithuania M Ruzauskas, N Couto, A Pavilonis, I Klimiene, R Siugzdiniene, ... Polish Journal of Veterinary Sciences, 2016 | 62 | 2016 |
| Genetic relatedness, antimicrobial and biocide susceptibility comparative analysis of methicillin-resistant and-susceptible Staphylococcus pseudintermedius from Portugal N Couto, A Belas, I Couto, V Perreten, C Pomba Microbial Drug Resistance 20 (4), 364-371, 2014 | 57 | 2014 |
| Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting JJC de Vries, JR Brown, N Couto, M Beer, P Le Mercier, I Sidorov, A Papa, ... Journal of Clinical Virology 138, 104812, 2021 | 55 | 2021 |
| A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings HA Thorpe, R Booton, T Kallonen, MJ Gibbon, N Couto, V Passet, ... Nature Microbiology 7 (12), 2054-2067, 2022 | 54 | 2022 |
| Clonal diversity, virulence patterns and antimicrobial and biocide susceptibility among human, animal and environmental MRSA in Portugal N Couto, A Belas, K Kadlec, S Schwarz, C Pomba Journal of Antimicrobial Chemotherapy 70 (9), 2483-2487, 2015 | 53 | 2015 |
| Prevalence, species distribution and antimicrobial resistance patterns of methicillin-resistant staphylococci in Lithuanian pet animals M Ruzauskas, N Couto, S Kerziene, R Siugzdiniene, I Klimiene, ... Acta Veterinaria Scandinavica 57, 1-7, 2015 | 48 | 2015 |
| Treatment of a lower urinary tract infection in a cat caused by a multi-drug methicillin-resistant Staphylococcus pseudintermedius and Enterococcus faecalis C Pomba, N Couto, A Moodley Journal of Feline Medicine and Surgery 12 (10), 802-806, 2010 | 43 | 2010 |
