EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data ATL Lun, S Riesenfeld, T Andrews, TP Dao, T Gomes, ... Genome biology 20, 1-9, 2019 | 652 | 2019 |
A multimodal cell census and atlas of the mammalian primary motor cortex Principal manuscript editors, Analysis coordination, ... Nature 598 (7879), 86-102, 2021 | 285 | 2021 |
Targeted elimination of senescent beta cells prevents type 1 diabetes PJ Thompson, A Shah, V Ntranos, F Van Gool, M Atkinson, A Bhushan Cell metabolism 29 (5), 1045-1060. e10, 2019 | 285 | 2019 |
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ... Nature 598 (7879), 103-110, 2021 | 205 | 2021 |
Determining sequencing depth in a single-cell RNA-seq experiment MJ Zhang, V Ntranos, D Tse Nature communications 11 (1), 774, 2020 | 156 | 2020 |
Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts V Ntranos, GM Kamath, JM Zhang, L Pachter, DN Tse Genome biology 17 (1), 112, 2016 | 149 | 2016 |
A discriminative learning approach to differential expression analysis for single-cell RNA-seq V Ntranos, L Yi, P Melsted, L Pachter Nature methods 16 (2), 163-166, 2019 | 144 | 2019 |
The barcode, UMI, set format and BUStools P Melsted, V Ntranos, L Pachter Bioinformatics 35 (21), 4472-4473, 2019 | 131 | 2019 |
Cognitive femtocells: Breaking the spatial reuse barrier of cellular systems A Adhikary, V Ntranos, G Caire 2011 Information Theory and Applications Workshop, 1-10, 2011 | 118 | 2011 |
Single-cell transcriptional profiling of human thymic stroma uncovers novel cellular heterogeneity in the thymic medulla JL Bautista, NT Cramer, CN Miller, J Chavez, DI Berrios, LE Byrnes, ... Nature communications 12 (1), 1096, 2021 | 112 | 2021 |
Genome-wide prediction of disease variant effects with a deep protein language model N Brandes, G Goldman, CH Wang, CJ Ye, V Ntranos Nature Genetics 55 (9), 1512-1522, 2023 | 108 | 2023 |
Cellular interference alignment V Ntranos, MA Maddah-Ali, G Caire IEEE Transactions on Information Theory 61 (3), 1194-1217, 2015 | 88 | 2015 |
Expanding the compute-and-forward framework: Unequal powers, signal levels, and multiple linear combinations B Nazer, VR Cadambe, V Ntranos, G Caire IEEE Transactions on Information Theory 62 (9), 4879-4909, 2016 | 65 | 2016 |
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types Z Yao, H Liu, F Xie, S Fischer, AS Booeshaghi, RS Adkins, AI Aldridge, ... Biorxiv, 2020.02. 29.970558, 2020 | 62 | 2020 |
Understanding interdependency through complex information sharing F Rosas, V Ntranos, CJ Ellison, S Pollin, M Verhelst Entropy 18 (2), 38, 2016 | 48 | 2016 |
Single-cell multiomics defines tolerogenic extrathymic Aire-expressing populations with unique homology to thymic epithelium J Wang, CA Lareau, JL Bautista, AR Gupta, K Sandor, J Germino, Y Yin, ... Science immunology 6 (65), eabl5053, 2021 | 45 | 2021 |
Medoids in almost-linear time via multi-armed bandits V Bagaria, G Kamath, V Ntranos, M Zhang, D Tse International Conference on Artificial Intelligence and Statistics, 500-509, 2018 | 42 | 2018 |
Real-time multi-criteria social graph partitioning: A game theoretic approach N Armenatzoglou, H Pham, V Ntranos, D Papadias, C Shahabi Proceedings of the 2015 ACM SIGMOD International Conference on Management of …, 2015 | 42 | 2015 |
On multicast beamforming for minimum outage V Ntranos, ND Sidiropoulos, L Tassiulas IEEE Transactions on Wireless Communications 8 (6), 3172-3181, 2009 | 39 | 2009 |
Allocations for heterogenous distributed storage V Ntranos, G Caire, AG Dimakis 2012 IEEE International Symposium on Information Theory Proceedings, 2761-2765, 2012 | 37 | 2012 |