| Large-scale genomic analysis of global Klebsiella pneumoniae plasmids reveals multiple simultaneous clusters of carbapenem-resistant hypervirulent strains A Spadar, J Perdigão, S Campino, TG Clark Genome medicine 15 (1), 3, 2023 | 31 | 2023 |
| Whole-genome sequencing resolves a polyclonal outbreak by extended-spectrum beta-lactam and carbapenem-resistant Klebsiella pneumoniae in a Portuguese … J Perdigão, A Modesto, AL Pereira, O Neto, V Matos, A Godinho, J Phelan, ... Microbial genomics 7 (6), 000349, 2020 | 29 | 2020 |
| Genomic epidemiology of carbapenemase producing Klebsiella pneumoniae strains at a northern Portuguese hospital enables the detection of a misidentified Klebsiella variicola … J Perdigão, C Caneiras, R Elias, A Modesto, A Spadar, J Phelan, ... Microorganisms 8 (12), 1986, 2020 | 21 | 2020 |
| High-throughput barcoding method for the genetic surveillance of insecticide resistance and species identification in Anopheles gambiae complex malaria vectors M Campos, J Phelan, A Spadar, E Collins, A Gonçalves, B Pelloquin, ... Scientific reports 12 (1), 13893, 2022 | 20 | 2022 |
| Genomic epidemiological analysis of Klebsiella pneumoniae from Portuguese hospitals reveals insights into circulating antimicrobial resistance A Spadar, J Phelan, R Elias, A Modesto, C Caneiras, C Marques, L Lito, ... Scientific Reports 12 (1), 13791, 2022 | 17 | 2022 |
| Identification of two insecticide resistance markers in Ethiopian Anopheles stephensi mosquitoes using a multiplex amplicon sequencing assay H Acford-Palmer, JE Phelan, FG Tadesse, M Kristan, E Collins, A Spadar, ... Scientific Reports 13 (1), 5612, 2023 | 14 | 2023 |
| Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals A Spadar, J Perdigão, J Phelan, J Charleston, A Modesto, R Elias, ... Scientific reports 11 (1), 6491, 2021 | 14 | 2021 |
| A next generation targeted amplicon sequencing method to screen for insecticide resistance mutations in Aedes aegypti populations reveals a rdl mutation in … EL Collins, JE Phelan, M Hubner, A Spadar, M Campos, D Ward, ... PLoS neglected tropical diseases 16 (12), e0010935, 2022 | 12 | 2022 |
| A phylogenomic approach for the analysis of colistin resistance-associated genes in Klebsiella pneumoniae, its mutational diversity and implications for phenotypic resistance R Elias, A Spadar, J Phelan, J Melo-Cristino, L Lito, M Pinto, L Gonçalves, ... International Journal of Antimicrobial Agents 59 (6), 106581, 2022 | 8 | 2022 |
| Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus A Spadar, JE Phelan, ED Benavente, M Campos, LF Gomez, F Mohareb, ... Parasites & vectors 14 (1), 332, 2021 | 6 | 2021 |
| Population genetic analysis of Plasmodium knowlesi reveals differential selection and exchange events between Borneo and Peninsular sub-populations A Turkiewicz, E Manko, DR Oresegun, D Nolder, A Spadar, CJ Sutherland, ... Scientific reports 13 (1), 2142, 2023 | 5 | 2023 |
| Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana RO Mills, I Dadzie, T Le-Viet, DJ Baker, HPK Addy, SA Akwetey, ... Journal of Antimicrobial Chemotherapy, dkae123, 2024 | 2 | 2024 |
| Emergence of KPC-3- and OXA-181-producing ST13 and ST17 Klebsiella pneumoniae in Portugal: genomic insights on national and international dissemination R Elias, A Spadar, APA Hendrickx, RA Bonnin, L Dortet, M Pinto, ... Journal of Antimicrobial Chemotherapy 78 (5), 1300-1308, 2023 | 2 | 2023 |
| Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae KK Tsang, MMC Lam, RR Wick, KL Wyres, M Bachman, S Baker, K Barry, ... Microbial genomics 10 (10), 001294, 2024 | 1 | 2024 |
| Uncovering the genetic diversity in Aedes aegypti insecticide resistance genes through global comparative genomics A Spadar, E Collins, LA Messenger, TG Clark, S Campino Scientific Reports 14 (1), 13447, 2024 | 1 | 2024 |
| Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data A Spadar, JE Phelan, TG Clark, S Campino Parasites & vectors 16 (1), 265, 2023 | 1 | 2023 |
| Genome-wide genetic variation and molecular surveillance of drug resistance in Plasmodium falciparum isolates from asymptomatic individuals in … LN Vanheer, A Mahamar, E Manko, SM Niambele, K Sanogo, A Youssouf, ... Scientific Reports 13 (1), 9522, 2023 | 1 | 2023 |
| Genomic analysis of hypervirulent Klebsiella pneumoniae reveals potential genetic markers for differentiation from classical strains A Spadar, J Perdigão, S Campino, TG Clark Scientific Reports 12 (1), 13671, 2022 | 1 | 2022 |
| Amplicon sequencing for Salmonella Paratyphi A detection J Mahindroo, A Spadar, C Troman, Z Dyson, K Holt, N Grassly | | 2024 |
| Nested PCR amplification of Salmonella Typhi from extracted wastewater concentrate S Fitz, A Shaw, D Abraham, A Spadar | | 2024 |
