Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits IM MacLeod, PJ Bowman, CJ Vander Jagt, M Haile-Mariam, KE Kemper, ... BMC genomics 17, 1-21, 2016 | 308 | 2016 |
Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals AC Bouwman, HD Daetwyler, AJ Chamberlain, CH Ponce, M Sargolzaei, ... Nature genetics 50 (3), 362-367, 2018 | 301 | 2018 |
Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions KE Kemper, CM Reich, PJ Bowman, CJ Vander Jagt, AJ Chamberlain, ... Genetics Selection Evolution 47, 1-17, 2015 | 155 | 2015 |
Quantifying the contribution of sequence variants with regulatory and evolutionary significance to 34 bovine complex traits R Xiang, I Berg, IM MacLeod, BJ Hayes, CP Prowse-Wilkins, M Wang, ... Proceedings of the National Academy of Sciences 116 (39), 19398-19408, 2019 | 121 | 2019 |
Scans for signatures of selection in Russian cattle breed genomes reveal new candidate genes for environmental adaptation and acclimation AA Yurchenko, HD Daetwyler, N Yudin, RD Schnabel, CJ Vander Jagt, ... Scientific reports 8 (1), 12984, 2018 | 112 | 2018 |
Extensive variation between tissues in allele specific expression in an outbred mammal AJ Chamberlain, CJ Vander Jagt, BJ Hayes, M Khansefid, LC Marett, ... BMC genomics 16, 1-20, 2015 | 88 | 2015 |
A catalogue of novel bovine long noncoding RNA across 18 tissues LT Koufariotis, YPP Chen, A Chamberlain, C Vander Jagt, BJ Hayes PloS one 10 (10), e0141225, 2015 | 88 | 2015 |
Genomic prediction from whole genome sequence in livestock: the 1000 bull genomes project BJ Hayes, HD Daetwyler, PJ Bowman, AJ Chamberlian, CJ Vander Jagt, ... 10th World Congress of Genetics Applied to Livestock Production, 2014 | 74 | 2014 |
Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in … LA Raven, BG Cocks, KE Kemper, AJ Chamberlain, CJ Vander Jagt, ... Mammalian genome 27, 81-97, 2016 | 67 | 2016 |
An initiator codon mutation in SDE2 causes recessive embryonic lethality in Holstein cattle S Fritz, C Hoze, E Rebours, A Barbat, M Bizard, A Chamberlain, ... Journal of dairy science 101 (7), 6220-6231, 2018 | 51 | 2018 |
Demographic history, adaptation, and NRAP convergent evolution at amino acid residue 100 in the world northernmost cattle from Siberia L Buggiotti, AA Yurchenko, NS Yudin, CJ Vander Jagt, NV Vorobieva, ... Molecular Biology and Evolution 38 (8), 3093-3110, 2021 | 42 | 2021 |
Gene expression of the heat stress response in bovine peripheral white blood cells and milk somatic cells in vivo JB Garner, AJ Chamberlain, C Vander Jagt, TTT Nguyen, BA Mason, ... Scientific Reports 10 (1), 19181, 2020 | 42 | 2020 |
Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues R Xiang, BJ Hayes, CJ Vander Jagt, IM MacLeod, M Khansefid, ... BMC genomics 19, 1-18, 2018 | 41 | 2018 |
Gene expression analysis of blood, liver, and muscle in cattle divergently selected for high and low residual feed intake M Khansefid, CA Millen, Y Chen, JE Pryce, AJ Chamberlain, ... Journal of animal science 95 (11), 4764-4775, 2017 | 37 | 2017 |
Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle M Khansefid, JE Pryce, S Bolormaa, Y Chen, CA Millen, AJ Chamberlain, ... BMC genomics 19, 1-18, 2018 | 34 | 2018 |
Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits M Wang, TP Hancock, AJ Chamberlain, CJ Vander Jagt, JE Pryce, ... BMC genomics 19, 1-17, 2018 | 27 | 2018 |
Survey of allele specific expression in bovine muscle GM Guillocheau, A El Hou, C Meersseman, D Esquerré, E Rebours, ... Scientific Reports 9 (1), 4297, 2019 | 20 | 2019 |
Expression quantitative trait loci in sheep liver and muscle contribute to variations in meat traits Z Yuan, B Sunduimijid, R Xiang, R Behrendt, MI Knight, BA Mason, ... Genetics Selection Evolution 53, 1-14, 2021 | 18 | 2021 |
Expression of mitochondrial protein genes encoded by nuclear and mitochondrial genomes correlate with energy metabolism in dairy cattle J Dorji, CJ Vander Jagt, JB Garner, LC Marett, BA Mason, CM Reich, ... BMC genomics 21, 1-17, 2020 | 18 | 2020 |
1000 Bull Genomes and SheepGenomeDB projects: enabling cost-effective sequence level analyses globally. HD Daetwyler, R Brauning, AJ Chamberlain, S McWilliam, A McCulloch, ... | 17 | 2017 |