P versus Q: Structural reaction coordinates capture protein folding on smooth landscapes SS Cho, Y Levy, PG Wolynes Proceedings of the National Academy of Sciences of the United States of …, 2006 | 251 | 2006 |
A survey of flexible protein binding mechanisms and their transition states using native topology based energy landscapes Y Levy, SS Cho, JN Onuchic, PG Wolynes Journal of molecular biology 346 (4), 1121-1145, 2005 | 248 | 2005 |
Consideration of molecular weight during compound selection in virtual target-based database screening Y Pan, N Huang, S Cho, AD Mackerell Journal of chemical information and computer sciences 43 (1), 267-272, 2003 | 220 | 2003 |
Entropic stabilization of proteins by TMAO SS Cho, G Reddy, JE Straub, D Thirumalai The Journal of Physical Chemistry B 115 (45), 13401-13407, 2011 | 217 | 2011 |
Domain swapping is a consequence of minimal frustration S Yang, SS Cho, Y Levy, MS Cheung, H Levine, PG Wolynes, JN Onuchic Proceedings of the National Academy of Sciences of the United States of …, 2004 | 200 | 2004 |
Origins of barriers and barrierless folding in BBL SS Cho, P Weinkam, PG Wolynes Proceedings of the National Academy of Sciences 105 (1), 118, 2008 | 120 | 2008 |
Symmetry and frustration in protein energy landscapes: A near degeneracy resolves the Rop dimer-folding mystery Y Levy, SS Cho, T Shen, JN Onuchic, PG Wolynes Proceedings of the National Academy of Sciences 102 (7), 2373-2378, 2005 | 120 | 2005 |
Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures SS Cho, DL Pincus, D Thirumalai Proceedings of the National Academy of Sciences 106 (41), 17349-17354, 2009 | 113 | 2009 |
The energy landscape of modular repeat proteins: topology determines folding mechanism in the ankyrin family DU Ferreiro, SS Cho, EA Komives, PG Wolynes Journal of molecular biology 354 (3), 679-692, 2005 | 105 | 2005 |
Stabilizing IκBα by “consensus” design DU Ferreiro, CF Cervantes, SME Truhlar, SS Cho, PG Wolynes, ... Journal of molecular biology 365 (4), 1201-1216, 2007 | 80 | 2007 |
Quantitative criteria for native energetic heterogeneity influences in the prediction of protein folding kinetics SS Cho, Y Levy, PG Wolynes Proceedings of the National Academy of Sciences 106 (2), 434, 2009 | 71 | 2009 |
Computational and experimental characterizations of silver nanoparticle–apolipoprotein biocorona R Li, R Chen, P Chen, Y Wen, PC Ke, SS Cho The Journal of Physical Chemistry B 117 (43), 13451-13456, 2013 | 61 | 2013 |
Overcoming residual frustration in domain-swapping: the roles of disulfide bonds in dimerization and aggregation SS Cho, Y Levy, JN Onuchic, PG Wolynes Physical biology 2, S44, 2005 | 58 | 2005 |
Minimal models for proteins and RNA: From folding to function DL Pincus, SS Cho, C Hyeon, D Thirumalai Progress in molecular biology and translational science 84, 203-250, 2008 | 54 | 2008 |
MD simulations of tRNA and aminoacyl-tRNA synthetases: dynamics, folding, binding, and allostery R Li, LM Macnamara, JD Leuchter, RW Alexander, SS Cho International Journal of Molecular Sciences 16 (7), 15872-15902, 2015 | 46 | 2015 |
Folding of Human Telomerase RNA Pseudoknot using ion-jump and temperature quench simulations. S Biyun, SS Cho, D Thirumalai Journal of the American Chemical Society, 2011 | 45 | 2011 |
Folding path of P5abc RNA involves direct coupling of secondary and tertiary structures E Koculi, SS Cho, R Desai, D Thirumalai, SA Woodson Nucleic acids research 40 (16), 8011-8020, 2012 | 43 | 2012 |
Molecular recognition of aldehydes by aldehyde dehydrogenase and mechanism of nucleophile activation T Wymore, J Hempel, SS Cho, AD MacKerell Jr, HB Nicholas Jr, ... PROTEINS: Structure, Function, and Bioinformatics 57 (4), 758-771, 2004 | 37 | 2004 |
Stretching single fibrin fibers hampers their lysis W Li, T Lucioni, R Li, K Bonin, SS Cho, M Guthold Acta biomaterialia 60, 264-274, 2017 | 24 | 2017 |
Fibrinogen Unfolding Mechanisms Are Not Too Much of a Stretch M Guthold, SS Cho Structure 19 (11), 1536-1538, 2011 | 20 | 2011 |