| Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics K Street, D Risso, RB Fletcher, D Das, J Ngai, N Yosef, E Purdom, ... BMC genomics 19, 1-16, 2018 | 1965 | 2018 |
| Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia DH Brann, T Tsukahara, C Weinreb, M Lipovsek, K Van den Berge, ... Science advances 6 (31), eabc5801, 2020 | 1440* | 2020 |
| Trajectory-based differential expression analysis for single-cell sequencing data K Van den Berge, H Roux de Bézieux, K Street, W Saelens, R Cannoodt, ... Nature communications 11 (1), 1201, 2020 | 494 | 2020 |
| A multimodal cell census and atlas of the mammalian primary motor cortex Principal manuscript editors, Analysis coordination, ... Nature 598 (7879), 86-102, 2021 | 298 | 2021 |
| Progressive immune dysfunction with advancing disease stage in renal cell carcinoma DA Braun, K Street, KP Burke, DL Cookmeyer, T Denize, CB Pedersen, ... Cancer cell 39 (5), 632-648. e8, 2021 | 290 | 2021 |
| A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ... Nature 598 (7879), 103-110, 2021 | 216 | 2021 |
| Deconstructing olfactory stem cell trajectories at single-cell resolution RB Fletcher, D Das, L Gadye, KN Street, A Baudhuin, A Wagner, MB Cole, ... Cell stem cell 20 (6), 817-830. e8, 2017 | 215 | 2017 |
| Bacterial microbiome of breast milk and child saliva from low-income Mexican-American women and children V Davé, K Street, S Francis, A Bradman, L Riley, B Eskenazi, N Holland Pediatric research 79 (6), 846-854, 2016 | 83 | 2016 |
| Injury activates transient olfactory stem cell states with diverse lineage capacities L Gadye, D Das, MA Sanchez, K Street, A Baudhuin, A Wagner, MB Cole, ... Cell stem cell 21 (6), 775-790. e9, 2017 | 79 | 2017 |
| An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types Z Yao, H Liu, F Xie, S Fischer, AS Booeshaghi, RS Adkins, AI Aldridge, ... Biorxiv, 2020.02. 29.970558, 2020 | 63 | 2020 |
| Urinary phthalate metabolites and biomarkers of oxidative stress in a Mexican-American cohort: variability in early and late pregnancy N Holland, K Huen, V Tran, K Street, B Nguyen, A Bradman, B Eskenazi Toxics 4 (1), 7, 2016 | 63 | 2016 |
| Significance analysis for clustering with single-cell RNA-sequencing data IN Grabski, K Street, RA Irizarry Nature Methods 20 (8), 1196-1202, 2023 | 46 | 2023 |
| PON1 as a model for integration of genetic, epigenetic, and expression data on candidate susceptibility genes K Huen, P Yousefi, K Street, B Eskenazi, N Holland Environmental epigenetics 1 (1), dvv003, 2015 | 42 | 2015 |
| Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference F Perraudeau, D Risso, K Street, E Purdom, S Dudoit F1000Research 6, 2017 | 26 | 2017 |
| MUC1-C dictates JUN and BAF-mediated chromatin remodeling at enhancer signatures in cancer stem cells A Bhattacharya, A Fushimi, N Yamashita, M Hagiwara, Y Morimoto, ... Molecular Cancer Research 20 (4), 556-567, 2022 | 23 | 2022 |
| A multimodal cell census and atlas of the mammalian primary motor cortex BRAIN Initiative Cell Census Network (BICCN), RS Adkins, AI Aldridge, ... Biorxiv, 2020.10. 19.343129, 2020 | 22 | 2020 |
| A guide to trajectory inference and RNA velocity P Weiler, K Van den Berge, K Street, S Tiberi Single Cell Transcriptomics: Methods and Protocols, 269-292, 2022 | 15 | 2022 |
| Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression HR de Bézieux, K Van den Berge, K Street, S Dudoit BioRxiv, 2021.03. 09.433671, 2021 | 15 | 2021 |
| Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects K Van den Berge, HJ Chou, HR de Bézieux, K Street, D Risso, J Ngai, ... Cell Reports Methods 2 (11), 2022 | 8 | 2022 |
| Spatially resolved immune exhaustion within the alloreactive microenvironment predicts liver transplant rejection A Barbetta, B Rocque, S Bangerth, K Street, C Weaver, S Chopra, J Kim, ... Science Advances 10 (15), eadm8841, 2024 | 4 | 2024 |
