Dynamic imaging of nascent RNA reveals general principles of transcription dynamics and stochastic splice site selection Y Wan, DG Anastasakis, J Rodriguez, M Palangat, P Gudla, G Zaki, ... Cell 184 (11), 2878-2895. e20, 2021 | 114 | 2021 |
Transcriptional bursting and co-bursting regulation by steroid hormone release pattern and transcription factor mobility DA Stavreva, DA Garcia, G Fettweis, PR Gudla, GF Zaki, V Soni, ... Molecular cell 75 (6), 1161-1177. e11, 2019 | 97 | 2019 |
A cross-study analysis of drug response prediction in cancer cell lines F Xia, J Allen, P Balaprakash, T Brettin, C Garcia-Cardona, A Clyde, ... Briefings in bioinformatics 23 (1), bbab356, 2022 | 51 | 2022 |
Applying graphics processor acceleration in a software defined radio prototyping environment W Plishker, GF Zaki, SS Bhattacharyya, C Clancy, J Kuykendall 2011 22nd IEEE International Symposium on Rapid System Prototyping, 67-73, 2011 | 32 | 2011 |
AI meets exascale computing: Advancing cancer research with large-scale high performance computing T Bhattacharya, T Brettin, JH Doroshow, YA Evrard, EJ Greenspan, ... Frontiers in oncology 9, 984, 2019 | 28 | 2019 |
Laparoscopic stereoscopic augmented reality: toward a clinically viable electromagnetic tracking solution X Liu, S Kang, W Plishker, G Zaki, TD Kane, R Shekhar Journal of Medical Imaging 3 (4), 045001, 2016 | 28 | 2016 |
The DSPCAD integrative command line environment: Introduction to DICE version 1.1 SS Bhattacharyya, W Plishker, C Shen, N Sane, G Zaki Institute for Advanced Computer Studies, University of Maryland at College …, 2011 | 27 | 2011 |
On-demand calibration and evaluation for electromagnetically tracked laparoscope in augmented reality visualization X Liu, W Plishker, G Zaki, S Kang, TD Kane, R Shekhar International journal of computer assisted radiology and surgery 11, 1163-1171, 2016 | 24 | 2016 |
Integration of dataflow-based heterogeneous multiprocessor scheduling techniques in gnu radio GF Zaki, W Plishker, SS Bhattacharyya, C Clancy, J Kuykendall Journal of Signal Processing Systems 70, 177-191, 2013 | 20 | 2013 |
A deep learning pipeline for nucleus segmentation G Zaki, PR Gudla, K Lee, J Kim, L Ozbun, S Shachar, M Gadkari, J Sun, ... Cytometry Part A 97 (12), 1248-1264, 2020 | 18 | 2020 |
Software-based PET-MR image coregistration: combined PET-MRI for the rest of us! MS Robertson, X Liu, W Plishker, GF Zaki, PK Vyas, NM Safdar, ... Pediatric radiology 46, 1552-1561, 2016 | 18 | 2016 |
Topological structure determination of RNA using small-angle X-ray scattering YR Bhandari, L Fan, X Fang, GF Zaki, EA Stahlberg, W Jiang, ... Journal of molecular biology 429 (23), 3635-3649, 2017 | 17 | 2017 |
Fault Tolerant Ethernet network model for control and entertainment in railway transportation systems M Hassan, S Gamal, SN Louis, GF Zaki, HH Amer 2008 Canadian Conference on Electrical and Computer Engineering, 000771-000774, 2008 | 16 | 2008 |
Graphics processing unit–accelerated nonrigid registration of MR images to CT images during ct-guided percutaneous liver tumor ablations J Tokuda, W Plishker, M Torabi, OI Olubiyi, G Zaki, S Tatli, SG Silverman, ... Academic radiology 22 (6), 722-733, 2015 | 14 | 2015 |
Model-based DSP implementation on FPGAs W Plishker, C Shen, SS Bhattacharyya, G Zaki, S Kedilaya, N Sane, ... Proceedings of the International Symposium on Rapid System Prototyping, 8-11, 2010 | 12 | 2010 |
Using the hardware/software co-design methodology to implement an embedded face recognition/verification system on an FPGA GF Zaki, RA Girgis, WW Moussa, WR Gabran 2007 Internatonal Conference on Microelectronics, 459-462, 2007 | 12 | 2007 |
The utility of cloud computing in analyzing GPU-accelerated deformable image registration of CT and CBCT images in head and neck cancer radiation therapy G Zaki, W Plishker, W Li, J Lee, H Quon, J Wong, R Shekhar IEEE Journal of Translational Engineering in Health and Medicine 4, 1-11, 2016 | 11 | 2016 |
Partial expansion graphs: Exposing parallelism and dynamic scheduling opportunities for DSP applications GF Zaki, W Plishker, SS Bhattacharyya, F Fruth 2012 IEEE 23Rd international conference on application-specific systems …, 2012 | 11 | 2012 |
Implementation, scheduling, and adaptation of partial expansion graphs on multicore platforms GF Zaki, W Plishker, SS Bhattacharyya, F Fruth Journal of Signal Processing Systems 87, 107-125, 2017 | 10 | 2017 |
Integration of dataflow optimization techniques into a software radio design framework GF Zaki, W Plishker, T Oshea, N McCarthy, C Clancy, E Blossom, ... 2009 Conference Record of the Forty-Third Asilomar Conference on Signals …, 2009 | 10 | 2009 |