| iPTMnet: an integrated resource for protein post-translational modification network discovery H Huang, CN Arighi, KE Ross, J Ren, G Li, SC Chen, Q Wang, J Cowart, ... Nucleic acids research 46 (D1), D542-D550, 2018 | 125 | 2018 |
| Protein Ontology (PRO): enhancing and scaling up the representation of protein entities DA Natale, CN Arighi, JA Blake, J Bona, C Chen, SC Chen, KR Christie, ... Nucleic acids research 45 (D1), D339-D346, 2017 | 99 | 2017 |
| Protein Ontology: a controlled structured network of protein entities DA Natale, CN Arighi, JA Blake, CJ Bult, KR Christie, J Cowart, ... Nucleic acids research 42 (D1), D415-D421, 2014 | 88 | 2014 |
| iPTMnet: integrative bioinformatics for studying PTM networks KE Ross, H Huang, J Ren, CN Arighi, G Li, CO Tudor, M Lv, JY Lee, ... Protein bioinformatics: from Protein modifications and networks to …, 2017 | 34 | 2017 |
| iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature J Ren, G Li, K Ross, C Arighi, P McGarvey, S Rao, J Cowart, S Madhavan, ... Database 2018, bay128, 2018 | 23 | 2018 |
| Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint KE Ross, CN Arighi, J Ren, H Huang, CH Wu Database 2013, 2013 | 23 | 2013 |
| WebGIVI: a web-based gene enrichment analysis and visualization tool L Sun, Y Zhu, ASMA Mahmood, CO Tudor, J Ren, K Vijay-Shanker, ... BMC bioinformatics 18, 1-10, 2017 | 17 | 2017 |
| Polygenic inheritance of cryptorchidism susceptibility in the LE/orl rat JS Barthold, J Pugarelli, ML MacDonald, J Ren, MO Adetunji, SW Polson, ... MHR: Basic science of reproductive medicine 22 (1), 18-34, 2016 | 12 | 2016 |
| Analysis of protein phosphorylation and its functional impact on protein–protein interactions via text mining of the scientific literature Q Wang, KE Ross, H Huang, J Ren, G Li, K Vijay-Shanker, CH Wu, ... Protein Bioinformatics: From Protein Modifications and Networks to …, 2017 | 10 | 2017 |
| Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint KE Ross, CN Arighi, J Ren, DA Natale, H Huang, CH Wu Frontiers in Genetics 4, 62, 2013 | 7 | 2013 |
| Scalable text mining assisted curation of post-translationally modified proteoforms in the protein ontology KE Ross, DA Natale, C Arighi, SC Chen, H Huang, G Li, J Ren, M Wang, ... CEUR workshop proceedings 1747, 2016 | 1 | 2016 |
| Improve large-scale automatic information extraction for biomedical knowledge discovery and curation J Ren University of Delaware, 2020 | | 2020 |
| IPTMNET: AN INTEGRATED RESOURCE FOR PROTEIN POST-TRANSLATIONAL MODIFICATION NETWORK DISCOVERY C Arighi, H Huang, K Ross, JI Ren, J Cowart, S Gavali, Q Wang, ... PROTEIN SCIENCE 28, 138-138, 2019 | | 2019 |
| Cloud-based Semantic Integration and Knowledge Discovery Systems in Precision Medicine C Chen, JE Cowart, J Ren, S Gavali, Y Wang, H Huang, CH Wu, ... Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018 | | 2018 |
| iPTMnet visualization with Cytoscape Web J Ren University of Delaware, 2013 | | 2013 |
