| Mapping genomic loci implicates genes and synaptic biology in schizophrenia V Trubetskoy, AF Pardiñas, T Qi, G Panagiotaropoulou, S Awasthi, ... Nature 604 (7906), 502-508, 2022 | 1319 | 2022 |
| SynGO: an evidence-based, expert-curated knowledge base for the synapse F Koopmans, P van Nierop, M Andres-Alonso, A Byrnes, T Cijsouw, ... Neuron 103 (2), 217-234. e4, 2019 | 603 | 2019 |
| Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells I Gupta, PG Collier, B Haase, A Mahfouz, A Joglekar, T Floyd, ... Nature biotechnology 36 (12), 1197-1202, 2018 | 292 | 2018 |
| Comparative analyses of data independent acquisition mass spectrometric approaches: DIA, WiSIM‐DIA, and untargeted DIA F Koopmans, JTC Ho, AB Smit, KW Li Proteomics 18 (1), 1700304, 2018 | 86 | 2018 |
| Stitching the synapse: Cross-linking mass spectrometry into resolving synaptic protein interactions MA Gonzalez-Lozano, F Koopmans, PF Sullivan, J Protze, G Krause, ... Science advances 6 (8), eaax5783, 2020 | 78 | 2020 |
| MIR137 schizophrenia-associated locus controls synaptic function by regulating synaptogenesis, synapse maturation and synaptic transmission E He, MAG Lozano, S Stringer, K Watanabe, K Sakamoto, F den Oudsten, ... Human molecular genetics 27 (11), 1879-1891, 2018 | 72 | 2018 |
| Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue SA Hardwick, W Hu, A Joglekar, L Fan, PG Collier, C Foord, J Balacco, ... Nature biotechnology 40 (7), 1082-1092, 2022 | 69 | 2022 |
| Interaction proteomics reveals brain region-specific AMPA receptor complexes N Chen, NJ Pandya, F Koopmans, V Castelo-Székelv, RC van der Schors, ... Journal of proteome research 13 (12), 5695-5706, 2014 | 61 | 2014 |
| Recent developments in data independent acquisition (DIA) mass spectrometry: application of quantitative analysis of the brain proteome KW Li, MA Gonzalez-Lozano, F Koopmans, AB Smit Frontiers in molecular neuroscience 13, 564446, 2020 | 60 | 2020 |
| Correlation profiling of brain sub-cellular proteomes reveals co-assembly of synaptic proteins and subcellular distribution NJ Pandya, F Koopmans, JA Slotman, I Paliukhovich, AB Houtsmuller, ... Scientific Reports 7 (1), 12107, 2017 | 51 | 2017 |
| Identifying true protein complex constituents in interaction proteomics: the example of the DMXL2 protein complex K Wan Li, N Chen, P Klemmer, F Koopmans, R Karupothula, AB Smit Proteomics 12 (15-16), 2428-2432, 2012 | 42 | 2012 |
| The proteome of granulovacuolar degeneration and neurofibrillary tangles in Alzheimer’s disease DC Hondius, F Koopmans, C Leistner, D Pita-Illobre, RM Peferoen-Baert, ... Acta neuropathologica 141, 341-358, 2021 | 41 | 2021 |
| Comparative hippocampal synaptic proteomes of rodents and primates: differences in neuroplasticity-related proteins F Koopmans, NJ Pandya, SK Franke, IH Phillippens, I Paliukhovich, KW Li, ... Frontiers in molecular neuroscience 11, 364, 2018 | 40 | 2018 |
| Interaction proteomics of canonical Caspr2 (CNTNAP2) reveals the presence of two Caspr2 isoforms with overlapping interactomes N Chen, F Koopmans, A Gordon, I Paliukhovich, RV Klaassen, ... Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1854 (7), 827-833, 2015 | 36 | 2015 |
| Splice‐dependent trans‐synaptic PTP δ–IL 1 RAPL 1 interaction regulates synapse formation and non‐REM sleep H Park, Y Choi, H Jung, S Kim, S Lee, H Han, H Kweon, S Kang, WS Sim, ... The EMBO Journal 39 (11), e104150, 2020 | 30 | 2020 |
| Empirical Bayesian random censoring threshold model improves detection of differentially abundant proteins F Koopmans, LN Cornelisse, T Heskes, TMH Dijkstra Journal of proteome research 13 (9), 3871-3880, 2014 | 25 | 2014 |
| Tomosyn associates with secretory vesicles in neurons through its N-and C-terminal domains CJ Geerts, R Mancini, N Chen, FTW Koopmans, KW Li, AB Smit, ... PLoS One 12 (7), e0180912, 2017 | 23 | 2017 |
| MS-DAP platform for downstream data analysis of label-free proteomics uncovers optimal workflows in benchmark data sets and increased sensitivity in analysis of Alzheimer’s … F Koopmans, KW Li, RV Klaassen, AB Smit Journal of Proteome Research 22 (2), 374-386, 2022 | 21 | 2022 |
| SALM 1 controls synapse development by promoting F‐actin/PIP2‐dependent Neurexin clustering M Brouwer, F Farzana, F Koopmans, N Chen, JW Brunner, S Oldani, ... The EMBO journal 38 (17), e101289, 2019 | 17 | 2019 |
| Power and optimal study design in iPSC-based brain disease modelling JW Brunner, HCA Lammertse, AA van Berkel, F Koopmans, KW Li, ... Molecular psychiatry 28 (4), 1545-1556, 2023 | 15 | 2023 |
