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Giovanni Palla
Giovanni Palla
在 helmholtz-muenchen.de 的电子邮件经过验证 - 首页
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Squidpy: a scalable framework for spatial omics analysis
G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ...
Nature methods 19 (2), 171-178, 2022
4382022
Best practices for single-cell analysis across modalities
L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ...
Nature Reviews Genetics 24 (8), 550-572, 2023
3082023
Spatial components of molecular tissue biology
G Palla, DS Fischer, A Regev, FJ Theis
Nature Biotechnology 40 (3), 308-318, 2022
1842022
Quantification of differential transcription factor activity and multiomics-based classification into activators and repressors: diffTF
I Berest, C Arnold, A Reyes-Palomares, G Palla, KD Rasmussen, H Giles, ...
Cell reports 29 (10), 3147-3159. e12, 2019
1092019
The scverse project provides a computational ecosystem for single-cell omics data analysis
I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ...
Nature biotechnology 41 (5), 604-606, 2023
772023
OME-Zarr: a cloud-optimized bioimaging file format with international community support
J Moore, D Basurto-Lozada, S Besson, J Bogovic, J Bragantini, EM Brown, ...
Histochemistry and Cell Biology 160 (3), 223-251, 2023
412023
GRaNIE and GRaNPA: inference and evaluation of enhancer‐mediated gene regulatory networks
A Kamal, C Arnold, A Claringbould, R Moussa, NH Servaas, M Kholmatov, ...
Molecular Systems Biology 19 (6), e11627, 2023
33*2023
SpatialData: an open and universal data framework for spatial omics
L Marconato, G Palla, KA Yamauchi, I Virshup, E Heidari, T Treis, ...
Nature Methods, 1-5, 2024
242024
Multimodal characterization of murine gastruloid development
S Suppinger, M Zinner, N Aizarani, I Lukonin, R Ortiz, C Azzi, MB Stadler, ...
Cell Stem Cell 30 (6), 867-884. e11, 2023
222023
Increased B-cell activating factor (BAFF)/B-lymphocyte stimulator (BLyS) in primary antiphospholipid syndrome is associated with higher adjusted global antiphospholipid …
LL van den Hoogen, G Palla, CPJ Bekker, RDE Fritsch-Stork, ...
RMD open 4 (2), e000693, 2018
202018
Mapping cells through time and space with moscot
D Klein, G Palla, M Lange, M Klein, Z Piran, M Gander, ...
bioRxiv, 2023.05. 11.540374, 2023
192023
Modeling single-cell dynamics using unbalanced parameterized monge maps
LV Eyring, D Klein, G Palla, S Becker, P Weiler, N Kilbertus, FJ Theis
bioRxiv, 2022.10. 04.510766, 2022
52022
Latent factor modeling of scRNA-seq data uncovers dysregulated pathways in autoimmune disease patients
G Palla, E Ferrero
Iscience 23 (9), 2020
52020
GraphCompass: Spatial metrics for differential analyses of cell organization across conditions
M Ali, M Kuijs, S Hediyeh-zadeh, T Treis, K Hrovatin, G Palla, AC Schaar, ...
bioRxiv, 2024.02. 02.578605, 2024
22024
Unbalancedness in Neural Monge Maps Improves Unpaired Domain Translation
L Eyring, D Klein, T Uscidda, G Palla, N Kilbertus, Z Akata, F Theis
arXiv preprint arXiv:2311.15100, 2023
22023
Unbalanced low-rank optimal transport solvers
M Scetbon, M Klein, G Palla, M Cuturi
Advances in Neural Information Processing Systems 36, 2024
12024
Nicheformer: a foundation model for single-cell and spatial omics
AC Schaar, A Tejada-Lapuerta, G Palla, R Gutgesell, L Halle, M Minaeva, ...
bioRxiv, 2024.04. 15.589472, 2024
12024
Uncertainty quantification for atlas-level cell type transfer
J Engelmann, L Hetzel, G Palla, L Sikkema, M Luecken, F Theis
arXiv preprint arXiv:2211.03793, 2022
12022
VIB Hackathon on spatial omics tools and methods
B Rombaut, L Pollaris, C Sang-aram, MV Cruysse, R Cannoodt, ...
2024
Defining and benchmarking open problems in single-cell analysis
MD Luecken, S Gigante, DB Burkhardt, R Cannoodt, DC Strobl, ...
Research Square, 2024
2024
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