High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch JK Michener, CD Smolke Metabolic Engineering, 2012 | 182 | 2012 |
Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways JK Michener, K Thodey, JC Liang, CD Smolke Metabolic Engineering, 2011 | 174 | 2011 |
Engineered Pseudomonas putida simultaneously catabolizes five major components of corn stover lignocellulose: Glucose, xylose, arabinose, p-coumaric acid, and acetic acid JR Elmore, GN Dexter, D Salvachúa, M O'Brien, DM Klingeman, K Gorday, ... Metabolic Engineering 62, 62-71, 2020 | 80 | 2020 |
Identification and treatment of heme depletion attributed to overexpression of a lineage of evolved P450 monooxygenases JK Michener, J Nielsen, CD Smolke Proceedings of the National Academy of Sciences, 2012 | 79 | 2012 |
Construction and optimization of a heterologous pathway for protocatechuate catabolism in Escherichia coli enables bioconversion of model aromatic compounds SM Clarkson, RJ Giannone, DM Kridelbaugh, JG Elkins, AM Guss, ... Applied and environmental microbiology 83 (18), e01313-17, 2017 | 62 | 2017 |
Rapid, parallel identification of catabolism pathways of lignin-derived aromatic compounds in Novosphingobium aromaticivorans JH Cecil, DC Garcia, RJ Giannone, JK Michener Applied and environmental microbiology 84 (22), e01185-18, 2018 | 54 | 2018 |
Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation JR Houser, C Barnhart, DR Boutz, SM Carroll, A Dasgupta, JK Michener, ... PLoS computational biology 11 (8), e1004400, 2015 | 48 | 2015 |
Hardwood tree genomics: unlocking woody plant biology GA Tuskan, AT Groover, J Schmutz, SP DiFazio, A Myburg, D Grattapaglia, ... Frontiers in plant science 9, 1799, 2018 | 43 | 2018 |
Plant–Microbe Interactions: From Genes to Ecosystems Using Populus as a Model System MA Cregger, DL Carper, S Christel, MJ Doktycz, J Labbé, JK Michener, ... Phytobiomes Journal 5 (1), 29-38, 2021 | 38 | 2021 |
Pathway discovery and engineering for cleavage of a β-1 lignin-derived biaryl compound GN Presley, AZ Werner, R Katahira, DC Garcia, SJ Haugen, KJ Ramirez, ... Metabolic Engineering 65, 1-10, 2021 | 37 | 2021 |
Effective use of a horizontally-transferred pathway for dichloromethane catabolism requires post–transfer refinement JK Michener, AA Camargo Neves, S Vuilleumier, F Bringel, CJ Marx Elife 3, e04279, 2014 | 37 | 2014 |
Ecosystem consequences of introducing plant growth promoting rhizobacteria to managed systems and potential legacy effects JAM Moore, PE Abraham, JK Michener, W Muchero, MA Cregger New Phytologist 234 (6), 1914-1918, 2022 | 34 | 2022 |
Microbial assimilation of lignin-derived aromatic compounds and conversion to value-added products CC Azubuike, MN Allemann, JK Michener Current Opinion in Microbiology 65, 64-72, 2022 | 31 | 2022 |
Phylogeny poorly predicts the utility of a challenging horizontally transferred gene in Methylobacterium species JK Michener, S Vuilleumier, F Bringel, CJ Marx Journal of Bacteriology 196 (11), 2101-2107, 2014 | 31 | 2014 |
Evaluation of chromosomal insertion loci in the Pseudomonas putida KT2440 genome for predictable biosystems design JE Chaves, R Wilton, Y Gao, NM Munoz, MC Burnet, Z Schmitz, J Rowan, ... Metabolic engineering communications 11, e00139, 2020 | 24 | 2020 |
Deep data analytics for genetic engineering of diatoms linking genotype to phenotype via machine learning AA Trofimov, AA Pawlicki, N Borodinov, S Mandal, TJ Mathews, ... npj Computational Materials 5 (1), 67, 2019 | 18 | 2019 |
Pseudodesulfovibrio mercurii sp. nov., a mercury-methylating bacterium isolated from sediment CC Gilmour, AB Soren, CM Gionfriddo, M Podar, JD Wall, SD Brown, ... International journal of systematic and evolutionary microbiology 71 (3), 004697, 2021 | 16 | 2021 |
Transfer of a Catabolic Pathway for Chloromethane in Methylobacterium Strains Highlights Different Limitations for Growth with Chloromethane or with … JK Michener, S Vuilleumier, F Bringel, CJ Marx Frontiers in Microbiology 7, 1116, 2016 | 16 | 2016 |
Modular engineering of biomass degradation pathways JE Chaves, GN Presley, JK Michener Processes 7 (4), 230, 2019 | 15 | 2019 |
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements A Bilbao, N Munoz, J Kim, DJ Orton, Y Gao, K Poorey, KR Pomraning, ... Nature communications 14 (1), 2461, 2023 | 14 | 2023 |