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Paul Bond
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The CCP4 suite: integrative software for macromolecular crystallography
J Agirre, M Atanasova, H Bagdonas, CB Ballard, A Baslé, ...
Acta Crystallographica Section D: Structural Biology 79 (6), 449-461, 2023
2412023
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge
CL Lawson, A Kryshtafovych, PD Adams, PV Afonine, ML Baker, ...
Nature methods 18 (2), 156-164, 2021
902021
Design and Synthesis of 56 Shape‐Diverse 3D Fragments
TD Downes, SP Jones, HF Klein, MC Wheldon, M Atobe, PS Bond, ...
Chemistry (Weinheim an der Bergstrasse, Germany) 26 (41), 8969, 2020
482020
Increase of enzyme activity through specific covalent modification with fragments
JF Darby, M Atobe, JD Firth, P Bond, GJ Davies, P O'Brien, RE Hubbard
Chemical science 8 (11), 7772-7779, 2017
442017
Lead-oriented synthesis: Investigation of organolithium-mediated routes to 3-D scaffolds and 3-D shape analysis of a virtual lead-like library
M Luethy, MC Wheldon, C Haji-Cheteh, M Atobe, PS Bond, P O’Brien, ...
Bioorganic & Medicinal Chemistry 23 (11), 2680-2694, 2015
362015
Analysis of HypD disulfide redox chemistry via optimization of Fourier transformed ac voltammetric data
H Adamson, M Robinson, PS Bond, B Soboh, K Gillow, AN Simonov, ...
Analytical chemistry 89 (3), 1565-1573, 2017
342017
Predicting protein model correctness in Coot using machine learning
PS Bond, KS Wilson, KD Cowtan
Acta Crystallographica Section D: Structural Biology 76 (8), 713-723, 2020
222020
ModelCraft: an advanced automated model-building pipeline using Buccaneer
PS Bond, KD Cowtan
Acta Crystallographica Section D: Structural Biology 78 (9), 1090-1098, 2022
212022
Comparison of automated crystallographic model-building pipelines
E Alharbi, PS Bond, R Calinescu, K Cowtan
Acta Crystallographica Section D: Structural Biology 75 (12), 1119-1128, 2019
142019
Shift-field refinement of macromolecular atomic models
K Cowtan, S Metcalfe, P Bond
Acta Crystallographica Section D: Structural Biology 76 (12), 1192-1200, 2020
122020
Predicting the performance of automated crystallographic model-building pipelines
E Alharbi, P Bond, R Calinescu, K Cowtan
Biological Crystallography 77 (12), 1591-1601, 2021
32021
Next generation software for placing atoms into electron density maps
PS Bond
University of York, 2021
32021
Online carbohydrate 3D structure validation with the Privateer web app
JS Dialpuri, H Bagdonas, LC Schofield, PT Pham, L Holland, PS Bond, ...
Acta Crystallographica Section F: Structural Biology Communications 80 (2), 2024
22024
Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge
CL Lawson, A Kryshtafovych, GD Pintilie, SK Burley, J Černý, VB Chen, ...
Research Square, 2024
22024
NucleoFind: a deep-learning network for interpreting nucleic acid electron density
JS Dialpuri, J Agirre, KD Cowtan, PS Bond
Nucleic Acids Research 52 (17), e84-e84, 2024
2024
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