BacPP: bacterial promoter prediction—a tool for accurate sigma-factor specific assignment in enterobacteria SA e Silva, S Echeverrigaray, GJL Gerhardt Journal of theoretical biology 287, 92-99, 2011 | 79 | 2011 |
DNA duplex stability as discriminative characteristic for Escherichia coli σ54-and σ28-dependent promoter sequences SA e Silva, F Forte, ITS Sartor, T Andrighetti, GJL Gerhardt, APL Delamare, ... Biologicals 42 (1), 22-28, 2014 | 33 | 2014 |
Gene Regulatory Networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 Inferred by a Computational Biology Approach AR Lenz, E Galán-Vásquez, E Balbinot, FP De Abreu, ... Frontiers in microbiology 11, 588263, 2020 | 16 | 2020 |
Rules extraction from neural networks applied to the prediction and recognition of prokaryotic promoters GJL Gerhardt, S Echeverrigaray Genetics and molecular biology 34, 353-360, 2011 | 16 | 2011 |
Bacillus subtilis promoter sequences data set for promoter prediction in Gram-positive bacteria RV Coelho, SA e Silva, S Echeverrigaray, APL Delamare Data in brief 19, 264-270, 2018 | 14 | 2018 |
Bacterial promoter features description and their application on E. coli in silico prediction and recognition approaches S Silva, S Echeverrigaray Bioinformatics. InTech 1, 241-260, 2012 | 13 | 2012 |
A survey of biological data in a big data perspective G Dall'Alba, PL Casa, FP Abreu, DL Notari, S de Avila e Silva Big Data 10 (4), 279-297, 2022 | 11 | 2022 |
Analysis of the nucleotide content of Escherichia coli promoter sequences related to the alternative sigma factors G Dall'Alba, PL Casa, DL Notari, AG Adami, S Echeverrigaray, ... Journal of Molecular Recognition 32 (5), e2770, 2019 | 11 | 2019 |
Characterization of promoters in archaeal genomes based on DNA structural parameters GS Martinez, S Sarkar, A Kumar, E Pérez‐Rueda, S de Avila e Silva MicrobiologyOpen 10 (5), e1230, 2021 | 10 | 2021 |
Machine learning and statistics shape a novel path in archaeal promoter annotation GS Martinez, E Pérez-Rueda, S Sarkar, A Kumar, S de Ávila e Silva BMC bioinformatics 23 (1), 171, 2022 | 9 | 2022 |
IntergenicDB: a database for intergenic sequences DL Notari, A Molin, V Davanzo, D Picolotto, HG Ribeiro, SA e Silva Bioinformation 10 (6), 381, 2014 | 9 | 2014 |
Analysis of carbohydrate-active enzymes and sugar transporters in Penicillium echinulatum: A genome-wide comparative study of the fungal lignocellulolytic system AR Lenz, E Balbinot, NS de Oliveira, FP de Abreu, PL Casa, ... Gene 822, 146345, 2022 | 8 | 2022 |
Differentially regulated targets in the fast-acting antidepressant effect of (R)-ketamine: A systems biology approach E Scotton, PL Casa, FP de Abreu, SA e Silva, RLB Wilges, MV Rossetto, ... Pharmacology Biochemistry and Behavior 223, 173523, 2023 | 7 | 2023 |
Multilanguage health record database focused on the active follow-up of patients and adaptable for patient-reported outcomes and clinical research design L Pellizzoni, SA e Silva, A Falavigna International Journal of Medical Informatics 135, 104065, 2020 | 7 | 2020 |
An artificial neural network classification method employing longitudinally monitored immune biomarkers to predict the clinical outcome of critically ill COVID-19 patients G Martinez, A Garduno, A Mahmud-Al-Rafat, AT Ostadgavahi, A Avery, ... PeerJ 10, e14487, 2022 | 6 | 2022 |
BacPP: a web-based tool for Gram-negative bacterial promoter prediction SA e Silva, DL Notari, FA Neis, HG Ribeiro, S Echeverrigaray Genet. Mol. Res. 15, gmr7973, 2016 | 6 | 2016 |
Perspectivas e Potencialidades da Interface Cérebro-Máquina GG MUSSATTO, SA SILVA Revista de Sistemas de Informação da FSMA 13, 2014 | 6 | 2014 |
Taxonomy, comparative genomics and evolutionary insights of Penicillium ucsense: a novel species in series Oxalica AR Lenz, E Balbinot, FP de Abreu, NS de Oliveira, RC Fontana, ... Antonie Van Leeuwenhoek 115 (8), 1009-1029, 2022 | 5 | 2022 |
DNA structural and physical properties reveal peculiarities in promoter sequences of the bacterium Escherichia coli K-12 GS Martinez, S de Ávila e Silva, A Kumar, E Pérez-Rueda SN Applied Sciences 3, 1-10, 2021 | 5 | 2021 |
Os Insetos e a Ciência na Escola: Estratégias de Ensino KMS Baccin, WS Azevedo Filho, S de Avila Scientia Cum Industria 8 (3), 13-16, 2020 | 5 | 2020 |