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Lin Yang
Lin Yang
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在 usc.edu 的电子邮件经过验证
标题
引用次数
引用次数
年份
Absence of a simple code: how transcription factors read the genome
M Slattery, T Zhou, L Yang, ACD Machado, R Gordân, R Rohs
Trends in biochemical sciences 39 (9), 381-399, 2014
5792014
DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale
T Zhou, L Yang, Y Lu, I Dror, AC Dantas Machado, T Ghane, R Di Felice, ...
Nucleic acids research 41 (W1), W56-W62, 2013
3272013
Quantitative modeling of transcription factor binding specificities using DNA shape
T Zhou, N Shen, L Yang, N Abe, J Horton, RS Mann, HJ Bussemaker, ...
Proceedings of the National Academy of Sciences 112 (15), 4654-4659, 2015
2582015
Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers
I Barozzi, M Simonatto, S Bonifacio, L Yang, R Rohs, S Ghisletti, G Natoli
Molecular cell 54 (5), 844-857, 2014
2412014
Deconvolving the recognition of DNA shape from sequence
N Abe, I Dror, L Yang, M Slattery, T Zhou, HJ Bussemaker, R Rohs, ...
Cell 161 (2), 307-318, 2015
2012015
DNA shape features improve transcription factor binding site predictions in vivo
A Mathelier, B Xin, TP Chiu, L Yang, R Rohs, WW Wasserman
Cell systems 3 (3), 278-286. e4, 2016
1592016
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding
TP Chiu, F Comoglio, T Zhou, L Yang, R Paro, R Rohs
Bioinformatics 32 (8), 1211-1213, 2016
1542016
TFBSshape: a motif database for DNA shape features of transcription factor binding sites
L Yang, T Zhou, I Dror, A Mathelier, WW Wasserman, R Gordân, R Rohs
Nucleic acids research 42 (D1), D148-D155, 2014
1392014
Transcription factor family‐specific DNA shape readout revealed by quantitative specificity models
L Yang, Y Orenstein, A Jolma, Y Yin, J Taipale, R Shamir, R Rohs
Molecular systems biology 13 (2), 910, 2017
1242017
GBshape: a genome browser database for DNA shape annotations
TP Chiu, L Yang, T Zhou, BJ Main, SCJ Parker, SV Nuzhdin, TD Tullius, ...
Nucleic acids research 43 (D1), D103-D109, 2015
632015
Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation
G Kuzu, EG Kaye, J Chery, T Siggers, L Yang, JR Dobson, S Boor, J Bliss, ...
PLoS genetics 12 (7), e1006120, 2016
492016
DNA sequence+ shape kernel enables alignment-free modeling of transcription factor binding
W Ma, L Yang, R Rohs, WS Noble
Bioinformatics 33 (19), 3003-3010, 2017
302017
Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED
T Hadžić, D Park, KC Abruzzi, L Yang, JS Trigg, R Rohs, M Rosbash, ...
Nucleic acids research 43 (4), 2199-2215, 2015
272015
Exposing the secrets of sex determination
R Rohs, ACD Machado, L Yang
NATURE STRUCTURAl & MolECUlAR BIoloGy 22 (6), 437-438, 2015
42015
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