Sustainable data analysis with Snakemake F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ... F1000Research 10, 2021 | 996 | 2021 |
The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis TM Walker, P Miotto, CU Köser, PW Fowler, J Knaggs, Z Iqbal, M Hunt, ... The Lancet Microbe 3 (4), e265-e273, 2022 | 161 | 2022 |
A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics CRyPTIC Consortium PLoS biology 20 (8), e3001721, 2022 | 64* | 2022 |
Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs RM Colquhoun, MB Hall, L Lima, LW Roberts, KM Malone, M Hunt, ... Genome biology 22, 1-30, 2021 | 54* | 2021 |
Epidemiological cut-off values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis CRyPTIC Consortium European Respiratory Journal 60 (4), 2022 | 49 | 2022 |
Gramtools enables multiscale variation analysis with genome graphs B Letcher, M Hunt, Z Iqbal Genome biology 22, 1-27, 2021 | 22 | 2021 |
Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis L Sonnenkalb, JJ Carter, A Spitaleri, Z Iqbal, M Hunt, KM Malone, ... The Lancet Microbe 4 (5), e358-e368, 2023 | 20 | 2023 |
Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes M Hunt, B Letcher, KM Malone, G Nguyen, MB Hall, RM Colquhoun, ... Genome Biology 23 (1), 147, 2022 | 19 | 2022 |
Sustainable data analysis with Snakemake. F1000Research. 2021; 10: 33 F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ... | 17 | |
A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth … PW Fowler, C Wright, H Spiers, T Zhu, EML Baeten, SW Hoosdally, ... Elife 11, e75046, 2022 | 10 | 2022 |
Sustainable data analysis with Snakemake [version 2; peer review: 2 approved]. F1000Research. 2021; 10: 33 F Mölder, KP Jablonski, B Letcher | 6 | |
Role for gene conversion in the evolution of cell-surface antigens of the malaria parasite Plasmodium falciparum B Letcher, S Maciuca, Z Iqbal Plos Biology 22 (3), e3002507, 2024 | | 2024 |
Genome-graph based genotyping with applications to highly variable genes in P. falciparum B Letcher | | 2023 |