Monovar: single-nucleotide variant detection in single cells H Zafar, Y Wang, L Nakhleh, N Navin, K Chen Nature methods 13 (6), 505-507, 2016 | 176 | 2016 |
SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models H Zafar, A Tzen, N Navin, K Chen, L Nakhleh Genome biology 18 (1), 1-20, 2017 | 157 | 2017 |
SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data H Zafar, N Navin, K Chen, L Nakhleh Genome research 29 (11), 1847-1859, 2019 | 116 | 2019 |
Single-cell lineage tracing by integrating CRISPR-Cas9 mutations with transcriptomic data H Zafar, C Lin, Z Bar-Joseph Nature communications 11 (1), 3055, 2020 | 59 | 2020 |
Adaptive-differential-evolution-based design of two-channel quadrature mirror filter banks for sub-band coding and data transmission P Ghosh, S Das, H Zafar IEEE Transactions on Systems, Man, and Cybernetics, Part C (Applications and …, 2012 | 42 | 2012 |
A modified differential evolution algorithm for shaped beam linear array antenna design A Mandal, H Zafar, S Das, AV Vasilakos Progress In Electromagnetics Research 125, 439-457, 2012 | 40 | 2012 |
Computational approaches for inferring tumor evolution from single-cell genomic data H Zafar, N Navin, L Nakhleh, K Chen Current Opinion in Systems Biology 7, 16-25, 2018 | 38 | 2018 |
Matrilysin/MMP-7 cleavage of perlecan/HSPG2 complexed with semaphorin 3A supports FAK-mediated stromal invasion by prostate cancer cells BJ Grindel, JR Martinez, TV Tellman, DA Harrington, H Zafar, L Nakhleh, ... Scientific reports 8 (1), 7262, 2018 | 34 | 2018 |
Efficient circular array synthesis with a memetic differential evolution algorithm A Mandal, H Zafar, S Das, AV Vasilakos Progress in Electromagnetics Research 38, 367-385, 2012 | 23 | 2012 |
Dynamic economic dispatch using Lbest-PSO with dynamically varying sub-swarms A Chowdhury, H Zafar, BK Panigrahi, KR Krishnanand, A Mohapatra, ... Memetic Computing 6 (2), 85-95, 2014 | 17 | 2014 |
Hierarchical dynamic neighborhood based particle swarm optimization for global optimization P Ghosh, H Zafar, S Das, A Abraham 2011 IEEE Congress of Evolutionary Computation (CEC), 757-764, 2011 | 16 | 2011 |
A Combinatorial Approach for Single-cell Variant Detection via Phylogenetic Inference M Edrisi, H Zafar, L Nakhleh 19th International Workshop on Algorithms in Bioinformatics (WABI 2019) 143 …, 2019 | 13 | 2019 |
Inference of cell state transitions and cell fate plasticity from single-cell with MARGARET K Pandey, H Zafar Nucleic Acids Research 50 (15), 2022 | 12 | 2022 |
An efficient memetic algorithm for parameter tuning of PID controller in AVR system A Mandal, H Zafar, P Ghosh, S Das, A Abraham 2011 11th International Conference on Hybrid Intelligent Systems (HIS), 265-270, 2011 | 8 | 2011 |
Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data M Edrisi, M Valecha, S Chowdary, S Robledo, H Ogilvie, D Posada, ... Bioinformatics 38 (Supplement_1), i195–i202, 2022 | 6 | 2022 |
Linear Array Geometry Synthesis with Minimum Side Lobe Level and Null Control Using Dynamic Multi-Swarm Particle Swarm Optimizer with Local Search P Ghosh, H Zafar International Conference on Swarm, Evolutionary, and Memetic Computing, 701-708, 2010 | 6 | 2010 |
Design of two-channel quadrature mirror filter banks using differential evolution with global and local neighborhoods P Ghosh, H Zafar, J Banerjee, S Das International Conference on Swarm, Evolutionary, and Memetic Computing, 1-10, 2011 | 5 | 2011 |
Charting spatial ligand-target activity using Renoir N Rao, R Pai, A Mishra, F Ginhoux, J Chan, A Sharma, H Zafar bioRxiv, 2023.04. 14.536833, 2023 | 3 | 2023 |
TruthBot: An Automated Conversational Tool for Intent Learning, Curated Information Presenting, and Fake News Alerting A Gupta, Y Varun, P Das, N Muttineni, P Srivastava, H Zafar, ... arXiv preprint arXiv:2102.00509, 2021 | 3 | 2021 |
scDREAMER for atlas-level integration of single-cell datasets using deep generative model paired with adversarial classifier A Shree, MK Pavan, H Zafar Nature Communications 14 (1), 7781, 2023 | 2 | 2023 |