| Clipper: p-value-free FDR control on high-throughput data from two conditions X Ge, YE Chen, D Song, ML McDermott, K Woyshner, A Manousopoulou, ... Genome biology 22, 1-29, 2021 | 45 | 2021 |
| APIR: Aggregating Universal Proteomics Database Search Algorithms for Peptide Identification with FDR Control YE Chen, X Ge, K Woyshner, ML McDermott, A Manousopoulou, ... Genomics, Proteomics & Bioinformatics, qzae042, 2024 | 2 | 2024 |
| Multi-sample non-negative spatial factorization Y Wang, K Woyshner, C Sriworarat, G Stein-O’Brie, LA Goff, KD Hansen bioRxiv, 2024 | | 2024 |
| APIR: a universal FDR-control framework for boosting peptide identification power by aggregating multiple proteomics database search algorithms YE Chen, K Woyshner, ML McDermott, A Manousopoulou, S Ficarro, ... bioRxiv, 2021 | | 2021 |
