| Optimization of biological pretreatment to enhance the quality of wheat straw pellets W Gao, LG Tabil, T Dumonceaux, S Espinel Ríos, R Zhao Biomass and Bioenergy 97, 77-89, 2017 | 63 | 2017 |
| Enabling anaerobic growth of Escherichia coli on glycerol in defined minimal medium using acetate as redox sink S Boecker, S Espinel-Ríos, K Bettenbrock, S Klamt Metabolic Engineering 73, 50-57, 2022 | 9 | 2022 |
| Production of 1,3-propanediol from crude glycerol: bioprocess design and profitability analysis S Espinel-Ríos, JE Ruiz-Espinoza Revista Mexicana de Ingeniería Química 18 (3), 831-840, 2019 | 9 | 2019 |
| Toward a modeling, optimization, and predictive control framework for fed‐batch metabolic cybergenetics S Espinel‐Ríos, B Morabito, J Pohlodek, K Bettenbrock, S Klamt, ... Biotechnology and Bioengineering 121 (1), 366-379, 2024 | 8 | 2024 |
| Efficient and simple gaussian process supported stochastic model predictive control for bioreactors using HILO-MPC B Morabito, J Pohlodek, L Kranert, S Espinel-Ríos, R Findeisen IFAC-PapersOnLine 55 (7), 922-927, 2022 | 8 | 2022 |
| Maximizing batch fermentation efficiency by constrained model‐based optimization and predictive control of adenosine triphosphate turnover S Espinel‐Ríos, K Bettenbrock, S Klamt, R Findeisen AIChE Journal 68 (4), e17555, 2022 | 7 | 2022 |
| A Plackett-Burman design for substituting MRS medium components with avocado seed hydrolysate for growth and lactic acid production by Lactobacillus sp. S Espinel-Ríos, DM Palmerin-Carreño, AL Hernandez-Orihuela, ... Revista Mexicana de Ingeniería Química 18 (1), 131-141, 2019 | 7 | 2019 |
| Soft sensor for monitoring dynamic changes in cell composition S Espinel-Ríos, B Morabito, K Bettenbrock, S Klamt, R Findeisen IFAC-PapersOnLine 55 (23), 98-103, 2022 | 6 | 2022 |
| Optimal control and dynamic modulation of the ATPase gene expression for enforced ATP wasting in batch fermentations S Espinel-Ríos, B Morabito, J Pohlodek, K Bettenbrock, S Klamt, ... IFAC-PapersOnLine 55 (7), 174-180, 2022 | 6 | 2022 |
| Batch-to-batch optimization with model adaptation leveraging Gaussian processes: the case of optogenetically assisted microbial consortia S Espinel-Ríos, R Kok, S Klamt, JL Avalos, R Findeisen 2023 23rd International Conference on Control, Automation and Systems (ICCAS …, 2023 | 5 | 2023 |
| Machine learning-supported cybergenetic modeling, optimization and control for synthetic microbial communities S Espinel-Ríos, K Bettenbrock, S Klamt, JL Avalos, R Findeisen Computer Aided Chemical Engineering 52, 2601-2606, 2023 | 4 | 2023 |
| Monitoring intracellular metabolite concentrations by moving horizon estimation based on kinetic modeling S Espinel-Ríos, G Slaviero, K Bettenbrock, S Klamt, R Findeisen IFAC-PapersOnLine 56 (2), 4608-4613, 2023 | 3 | 2023 |
| Cell-free biosynthesis meets dynamic optimization and control: a fed-batch framework S Espinel-Ríos, N Huber, EA Alcalá-Orozco, B Morabito, TFT Rexer, ... IFAC-PapersOnLine 55 (23), 92-97, 2022 | 3 | 2022 |
| Hybrid physics-informed metabolic cybergenetics: process rates augmented with machine-learning surrogates informed by flux balance analysis S Espinel-Ríos, JL Avalos Industrial & Engineering Chemistry Research, 2024 | 2 | 2024 |
| Linking intra-and extra-cellular metabolic domains via neural-network surrogates for dynamic metabolic control S Espinel-Ríos, JL Avalos arXiv preprint arXiv:2310.17179, 2023 | 2 | 2023 |
| Experimentally implemented dynamic optogenetic optimization of ATPase expression using knowledge-based and Gaussian-process-supported models S Espinel-Ríos, G Behrendt, J Bauer, B Morabito, J Pohlodek, A Schütze, ... Process Biochemistry 143, 174-185, 2024 | 1 | 2024 |
| Culture medium derived from avocado seed material A Martínez Antonio, AZ Minchaca Acosta, AL Hernández Orihuela, ... | 1 | 2016 |
| Enhancing the physical quality of barley straw pellets by optimizing biological pretreatment W Gao, L Tabil, R Zhao, S Espinel Ríos, T Dumonceaux 2016 ASABE Annual International Meeting, 1, 2016 | 1 | 2016 |
| Dynamic multiscale hybrid modelling of a CHO cell system for recombinant protein production O Pennington, S Espinel Ríos, MT Sebastian, A Dickson, D Zhang IFAC-PapersOnLine 58 (14), 133-138, 2024 | | 2024 |
| Biochemical implementation of acceleration sensing and PIDA control E Alexis, S Espinel-Ríos, IG Kevrekidis, JL Avalos bioRxiv, 2024.07. 02.601775, 2024 | | 2024 |
