Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA J Lipfert, GM Skinner, JM Keegstra, T Hensgens, T Jager, D Dulin, ... Proceedings of the National Academy of Sciences 111 (43), 15408-15413, 2014 | 188 | 2014 |
ILPR G-quadruplexes formed in seconds demonstrate high mechanical stabilities Z Yu, JD Schonhoft, S Dhakal, R Bajracharya, R Hegde, S Basu, H Mao Journal of the American Chemical Society 131 (5), 1876-1882, 2009 | 132 | 2009 |
Intramolecular folding in three tandem guanine repeats of human telomeric DNA D Koirala, T Mashimo, Y Sannohe, Z Yu, H Mao, H Sugiyama Chemical Communications 48 (14), 2006-2008, 2012 | 130 | 2012 |
Coexistence of an ILPR i-motif and a partially folded structure with comparable mechanical stability revealed at the single-molecule level S Dhakal, JD Schonhoft, D Koirala, Z Yu, S Basu, H Mao Journal of the American Chemical Society 132 (26), 8991-8997, 2010 | 126 | 2010 |
G-quadruplex and i-motif are mutually exclusive in ILPR double-stranded DNA S Dhakal, Z Yu, R Konik, Y Cui, D Koirala, H Mao Biophysical journal 102 (11), 2575-2584, 2012 | 121 | 2012 |
Structural and mechanical properties of individual human telomeric G-quadruplexes in molecularly crowded solutions S Dhakal, Y Cui, D Koirala, C Ghimire, S Kushwaha, Z Yu, PM Yangyuoru, ... Nucleic acids research 41 (6), 3915-3923, 2013 | 102 | 2013 |
Tertiary DNA structure in the single-stranded hTERT promoter fragment unfolds and refolds by parallel pathways via cooperative or sequential events Z Yu, V Gaerig, Y Cui, HJ Kang, V Gokhale, Y Zhao, LH Hurley, H Mao Journal of the American Chemical Society 134 (11), 5157-5164, 2012 | 95 | 2012 |
A force calibration standard for magnetic tweezers Z Yu, D Dulin, J Cnossen, M Köber, MM van Oene, O Ordu, BA Berghuis, ... Review of Scientific Instruments 85 (12), 2014 | 85 | 2014 |
Direct experimental evidence for quadruplex–quadruplex interaction within the human ILPR JD Schonhoft, R Bajracharya, S Dhakal, Z Yu, H Mao, S Basu Nucleic acids research 37 (10), 3310-3320, 2009 | 74 | 2009 |
Quantification of topological coupling between DNA superhelicity and G-quadruplex formation S Selvam, D Koirala, Z Yu, H Mao Journal of the American Chemical Society 136 (40), 13967-13970, 2014 | 57 | 2014 |
Single-molecule measurements of the binding between small molecules and DNA aptamers PM Yangyuoru, S Dhakal, Z Yu, D Koirala, SM Mwongela, H Mao Analytical chemistry 84 (12), 5298-5303, 2012 | 57 | 2012 |
Click chemistry assisted single-molecule fingerprinting reveals a 3D biomolecular folding funnel Z Yu, D Koirala, Y Cui, LF Easterling, Y Zhao, H Mao Journal of the American Chemical Society 134 (30), 12338-12341, 2012 | 53 | 2012 |
Detection of single nucleotide polymorphism using tension-dependent stochastic behavior of a single-molecule template D Koirala, Z Yu, S Dhakal, H Mao Journal of the American Chemical Society 133 (26), 9988-9991, 2011 | 50 | 2011 |
Non‐B DNA Structures Show Diverse Conformations and Complex Transition Kinetics Comparable to RNA or Proteins—A Perspective from Mechanical Unfolding and Refolding Experiments Z Yu, H Mao The Chemical Record 13 (1), 102-116, 2013 | 49 | 2013 |
Direct quantification of loop interaction and π–π stacking for G-quadruplex stability at the submolecular level C Ghimire, S Park, K Iida, P Yangyuoru, H Otomo, Z Yu, K Nagasawa, ... Journal of the American Chemical Society 136 (44), 15537-15544, 2014 | 48 | 2014 |
Intramolecular folding in human ILPR fragment with three C-rich repeats S Dhakal, JL Lafontaine, Z Yu, D Koirala, H Mao PLoS One 7 (6), e39271, 2012 | 40 | 2012 |
Exploded view of higher order G-quadruplex structures through click-chemistry assisted single-molecule mechanical unfolding S Selvam, Z Yu, H Mao Nucleic Acids Research 44 (1), 45-55, 2016 | 25 | 2016 |
The dynamics of forming a triplex in an artificial telomere inferred by DNA mechanics N Li, J Wang, K Ma, L Liang, L Mi, W Huang, X Ma, Z Wang, W Zheng, ... Nucleic Acids Research 47 (15), e86-e86, 2019 | 19 | 2019 |
Single-molecule multiplexed profiling of protein–DNA complexes using Magnetic Tweezers L Liang, Z Wang, L Qu, W Huang, S Guo, X Guan, W Zhang, F Sun, ... Journal of Biological Chemistry 296, 2021 | 11 | 2021 |
Interactions between PHD3-bromo of MLL1 and H3K4me3 revealed by single-molecule magnetic tweezers in a parallel DNA circuit X Ma, M Zhu, J Liu, X Li, L Qu, L Liang, W Huang, J Wang, N Li, JH Chen, ... Bioconjugate Chemistry 30 (12), 2998-3006, 2019 | 10 | 2019 |