SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 212 | 2020 |
Dynamic modelling of pathways to cellular senescence reveals strategies for targeted interventions P Dalle Pezze, G Nelson, EG Otten, VI Korolchuk, TBL Kirkwood, ... PLoS computational biology 10 (8), e1003728, 2014 | 174 | 2014 |
A dynamic network model of mTOR signaling reveals TSC-independent mTORC2 regulation P Dalle Pezze, AG Sonntag, A Thien, MT Prentzell, M Gödel, S Fischer, ... Science Signaling 5 (217), ra25-ra25, 2012 | 174 | 2012 |
A systems study reveals concurrent activation of AMPK and mTOR by amino acids P Dalle Pezze, S Ruf, AG Sonntag, M Langelaar-Makkinje, P Hall, ... Nature communications 7 (1), 13254, 2016 | 166 | 2016 |
A modelling–experimental approach reveals insulin receptor substrate (IRS)‐dependent regulation of adenosine monosphosphate‐dependent kinase (AMPK) by insulin AG Sonntag, P Dalle Pezze, DP Shanley, K Thedieck The FEBS journal 279 (18), 3314-3328, 2012 | 73 | 2012 |
Increasing extracellular H2O2 produces a bi-phasic response in intracellular H2O2, with peroxiredoxin hyperoxidation only triggered once the cellular H2O2-buffering capacity is … LE Tomalin, AM Day, ZE Underwood, GR Smith, P Dalle Pezze, C Rallis, ... Free Radical Biology and Medicine 95, 333-348, 2016 | 50 | 2016 |
The systems biology format converter N Rodriguez, JB Pettit, P Dalle Pezze, L Li, A Henry, MP van Iersel, ... BMC Bioinformatics 17 (1), 154, 2016 | 33 | 2016 |
ATG13 dynamics in nonselective autophagy and mitophagy: insights from live imaging studies and mathematical modeling P Dalle Pezze, E Karanasios, V Kandia, M Manifava, SA Walker, ... Autophagy 17 (5), 1131-1141, 2021 | 23 | 2021 |
Systems modelling ageing: from single senescent cells to simple multi-cellular models AM Guimera, C Welsh, P Dalle Pezze, N Fullard, G Nelson, MF Roger, ... Essays in Biochemistry 61 (3), 369, 2017 | 16 | 2017 |
SBpipe: a collection of pipelines for automating repetitive simulation and analysis tasks P Dalle Pezze, N Le Novere BMC Systems Biology 11 (1), 46, 2017 | 13 | 2017 |
Response to Comment on “A Dynamic Network Model of mTOR Signaling Reveals TSC-Independent mTORC2 Regulation”: Building a Model of the mTOR Signaling Network with a Potentially … P Dalle Pezze, AG Sonntag, DP Shanley, K Thedieck Science Signaling 5 (232), lc4, 2012 | 4 | 2012 |
Method for modelling, optimizing, parameterizing, testing and validating a dynamic network with network perturbations K Thedieck, A Sonntag, D Shanley, P Dalle Pezze US Patent 10,910,084, 2021 | 2 | 2021 |
Dynamical models of the mammalian target of rapamycin network in ageing P Dalle Pezze Newcastle University, UK, 2013 | | 2013 |
Protein model quality assessment using a new method based on neural networks and clustering P Dalle Pezze University of Padova, Italy. https://github.com/pdp10/theses/blob/master …, 2009 | | 2009 |
Dynamic modelling suggests differential mechanisms for initiation of non-selective autophagy and mitophagy P Dalle Pezze, E Karanasios, V Kandia, SA Walker, NT Ktistakis, ... | | |