AMPA receptor GluA2 subunit defects are a cause of neurodevelopmental disorders V Salpietro, CL Dixon, H Guo, OD Bello, J Vandrovcova, S Efthymiou, ... Nature communications 10 (1), 3094, 2019 | 193 | 2019 |
Multiplexed discrimination of single amino acid residues in polypeptides in a single SERS hot spot JA Huang, MZ Mousavi, G Giovannini, Y Zhao, A Hubarevich, MA Soler, ... Angewandte Chemie International Edition 59 (28), 11423-11431, 2020 | 95 | 2020 |
Analysis of state-specific vibrations coupled to the unidirectional energy transfer in conjugated dendrimers MA Soler, AE Roitberg, T Nelson, S Tretiak, S Fernandez-Alberti The Journal of Physical Chemistry A 116 (40), 9802-9810, 2012 | 61 | 2012 |
Effects of knots on protein folding properties MA Soler, PFN Faisca PloS one 8 (9), e74755, 2013 | 47 | 2013 |
Distance-based configurational entropy of proteins from molecular dynamics simulations F Fogolari, A Corazza, S Fortuna, MA Soler, B VanSchouwen, ... PLoS One 10 (7), e0132356, 2015 | 42 | 2015 |
Effects of knot type in the folding of topologically complex lattice proteins MA Soler, A Nunes, PFN Faísca The Journal of chemical physics 141 (2), 2014 | 41 | 2014 |
Binding affinity prediction of nanobody–protein complexes by scoring of molecular dynamics trajectories MA Soler, S Fortuna, A De Marco, A Laio Physical Chemistry Chemical Physics 20 (5), 3438-3444, 2018 | 39 | 2018 |
Instantaneous normal modes, resonances, and decay channels in the vibrational relaxation of the amide I mode of N-methylacetamide-D in liquid deuterated water A Bastida, MA Soler, J Zúñiga, A Requena, A Kalstein, ... The Journal of chemical physics 132 (22), 2010 | 39 | 2010 |
A consensus protocol for the in silico optimisation of antibody fragments MA Soler, B Medagli, MS Semrau, P Storici, G Bajc, A De Marco, A Laio, ... Chemical Communications 55 (93), 14043-14046, 2019 | 35 | 2019 |
Steric confinement and enhanced local flexibility assist knotting in simple models of protein folding MA Soler, A Rey, PFN Faísca Physical Chemistry Chemical Physics 18 (38), 26391-26403, 2016 | 33 | 2016 |
Molecular dynamics simulations and docking enable to explore the biophysical factors controlling the yields of engineered nanobodies MA Soler, A De Marco, S Fortuna Scientific reports 6 (1), 34869, 2016 | 30 | 2016 |
Signature of nonadiabatic coupling in excited-state vibrational modes MA Soler, T Nelson, AE Roitberg, S Tretiak, S Fernandez-Alberti The Journal of Physical Chemistry A 118 (45), 10372-10379, 2014 | 28 | 2014 |
Hybrid Quantum/Classical Simulations of the Vibrational Relaxation of the Amide I Mode of N-Methylacetamide in D2O Solution A Bastida, MA Soler, J Zúñiga, A Requena, A Kalstein, ... The Journal of Physical Chemistry B 116 (9), 2969-2980, 2012 | 26 | 2012 |
Vibrational dynamics of polyatomic molecules in solution: assignment, time evolution and mixing of instantaneous normal modes A Kalstein, S Fernández-Alberti, A Bastida, MA Soler, MH Farag, J Zúñiga, ... Theoretical Chemistry Accounts 128, 769-782, 2011 | 26 | 2011 |
Assessing the capability of in silico mutation protocols for predicting the finite temperature conformation of amino acids R Ochoa, MA Soler, A Laio, P Cossio Physical Chemistry Chemical Physics 20 (40), 25901-25909, 2018 | 23 | 2018 |
Computational design of cyclic peptides for the customized oriented immobilization of globular proteins MA Soler, A Rodriguez, A Russo, AF Adedeji, CJD Foumthuim, ... Physical Chemistry Chemical Physics 19 (4), 2740-2748, 2017 | 23 | 2017 |
Molecular Dynamics Simulations and Instantaneous Normal-Mode Analysis of the Vibrational Relaxation of the C−H Stretching Modes of N-methylacetamide-d in … A Bastida, MA Soler, J Zuniga, A Requena, A Kalstein, ... The Journal of Physical Chemistry A 114 (43), 11450-11461, 2010 | 22 | 2010 |
Accurate estimation of the entropy of rotation–translation probability distributions F Fogolari, CJ Dongmo Foumthuim, S Fortuna, MA Soler, A Corazza, ... Journal of chemical theory and computation 12 (1), 1-8, 2016 | 21 | 2016 |
How Difficult Is It to Fold a Knotted Protein? In Silico Insights from Surface-Tethered Folding Experiments MA Soler, PFN Faisca PLoS One 7 (12), e52343, 2012 | 20 | 2012 |
A method for analyzing the vibrational energy flow in biomolecules in solution MA Soler, A Bastida, MH Farag, J Zúñiga, A Requena The Journal of chemical physics 135 (20), 2011 | 19 | 2011 |