| The Ca2+/calmodulin2‐binding transcription factor TGA3 elevates LCD expression and H2S production to bolster Cr6+ tolerance in Arabidopsis H Fang, Z Liu, Y Long, Y Liang, Z Jin, L Zhang, D Liu, H Li, J Zhai, Y Pei The Plant Journal 91 (6), 1038-1050, 2017 | 104 | 2017 |
| Post-transcriptional splicing of nascent RNA contributes to widespread intron retention in plants J Jia, Y Long, H Zhang, Z Li, Z Liu, Y Zhao, D Lu, X Jin, X Deng, R Xia, ... Nature Plants 6 (7), 780-788, 2020 | 94 | 2020 |
| FlsnRNA-seq: protoplasting-free full-length single-nucleus RNA profiling in plants Y Long, Z Liu, J Jia, W Mo, L Fang, D Lu, B Liu, H Zhang, W Chen, J Zhai Genome biology 22, 1-14, 2021 | 66 | 2021 |
| Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis Y Zhang, CJ Harris, Q Liu, W Liu, I Ausin, Y Long, L Xiao, L Feng, X Chen, ... Proceedings of the National Academy of Sciences 115 (5), E1069-E1074, 2018 | 58 | 2018 |
| Plant public RNA‐seq database: a comprehensive online database for expression analysis of~ 45 000 plant public RNA‐seq libraries Y Yu, H Zhang, Y Long, Y Shu, J Zhai Plant Biotechnology Journal 20 (5), 806, 2022 | 54 | 2022 |
| Soybean DICER-LIKE2 regulates seed coat color via production of primary 22-nucleotide small interfering RNAs from long inverted repeats J Jia, R Ji, Z Li, Y Yu, M Nakano, Y Long, L Feng, C Qin, D Lu, J Zhan, ... The Plant Cell 32 (12), 3662-3673, 2020 | 40 | 2020 |
| Integrated single-nucleus and spatial transcriptomics captures transitional states in soybean nodule maturation Z Liu, X Kong, Y Long, S Liu, H Zhang, J Jia, W Cui, Z Zhang, X Song, ... Nature Plants 9 (4), 515-524, 2023 | 31 | 2023 |
| FLEP-seq: simultaneous detection of RNA polymerase II position, splicing status, polyadenylation site and poly (A) tail length at genome-wide scale by single-molecule nascent … Y Long, J Jia, W Mo, X Jin, J Zhai Nature Protocols 16 (9), 4355-4381, 2021 | 25 | 2021 |
| GAMETOPHYTE DEFECTIVE 1, a putative subunit of RNases P/MRP, is essential for female gametogenesis and male competence in Arabidopsis SQ Wang, DQ Shi, YP Long, J Liu, WC Yang PloS one 7 (4), e33595, 2012 | 25 | 2012 |
| An atlas of plant full-length RNA reveals tissue-specific and monocots–dicots conserved regulation of poly (A) tail length J Jia, W Lu, B Liu, H Fang, Y Yu, W Mo, H Zhang, X Jin, Y Shu, Y Long, ... Nature Plants 8 (9), 1118-1126, 2022 | 22 | 2022 |
| Landscape of transcription termination in Arabidopsis revealed by single-molecule nascent RNA sequencing W Mo, B Liu, H Zhang, X Jin, D Lu, Y Yu, Y Liu, J Jia, Y Long, X Deng, ... Genome biology 22, 1-21, 2021 | 19 | 2021 |
| Multiplex CRISPR-Cas9 editing of DNA methyltransferases in rice uncovers a class of non-CG methylation specific for GC-rich regions D Hu, Y Yu, C Wang, Y Long, Y Liu, L Feng, D Lu, B Liu, J Jia, R Xia, J Du, ... The Plant Cell 33 (9), 2950-2964, 2021 | 19 | 2021 |
| BICELLULAR POLLEN 1 is a modulator of DNA replication and pollen development in Arabidopsis YP Long, DJ Xie, YY Zhao, DQ Shi, WC Yang New Phytologist 222 (1), 588-603, 2019 | 15 | 2019 |
| Characteristics and processing of Pol IV-dependent transcripts in Arabidopsis HY Kuo, EL Jacobsen, Y Long, X Chen, J Zhai Journal of Genetics and Genomics 44 (1), 3-6, 2017 | 10 | 2017 |
| PPRD: A comprehensive online database for expression analysis of~ 45,000 plant public RNA-Seq libraries Y Yu, H Zhang, Y Long, Y Shu, J Zhai BioRxiv, 2022.01. 28.477949, 2022 | 8 | 2022 |
| Single-nucleus transcriptomes reveal spatiotemporal symbiotic perception and early response in Medicago Z Liu, J Yang, Y Long, C Zhang, D Wang, X Zhang, W Dong, L Zhao, C Liu, ... Nature Plants 9 (10), 1734-1748, 2023 | 7 | 2023 |
| Single-molecule targeted accessibility and methylation sequencing of centromeres, telomeres and rDNAs in Arabidopsis W Mo, Y Shu, B Liu, Y Long, T Li, X Cao, X Deng, J Zhai Nature Plants 9 (9), 1439-1450, 2023 | 6 | 2023 |
| Pore‐C simultaneously captures genome‐wide multi‐way chromatin interaction and associated DNA methylation status in Arabidopsis Z Li, Y Long, Y Yu, F Zhang, H Zhang, Z Liu, J Jia, W Mo, SZ Tian, ... Plant Biotechnology Journal 20 (6), 1009, 2022 | 6 | 2022 |
| Cell type–specific cytonuclear coevolution in three allopolyploid plant species K Zhang, X Zhao, Y Zhao, Z Zhang, Z Liu, Z Liu, Y Yu, J Li, Y Ma, Y Dong, ... Proceedings of the National Academy of Sciences 120 (40), e2310881120, 2023 | 3 | 2023 |
| Integrated single-nucleus and spatial transcriptomics captures transitional states in soybean nodule symbiosis establishment Z Liu, X Kong, Y Long, H Zhang, J Jia, L Qiu, J Zhai, Z Yan bioRxiv, 2022.06. 30.498286, 2022 | 3 | 2022 |
