SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population A Ameur, J Dahlberg, P Olason, F Vezzi, R Karlsson, M Martin, J Viklund, ... European Journal of Human Genetics 25 (11), 1253-1260, 2017 | 192 | 2017 |
Towards reproducible computational drug discovery N Schaduangrat, S Lampa, S Simeon, MP Gleeson, O Spjuth, ... Journal of cheminformatics 12, 1-30, 2020 | 148 | 2020 |
Experiences with workflows for automating data-intensive bioinformatics O Spjuth, E Bongcam-Rudloff, GC Hernández, L Forer, M Giovacchini, ... Biology direct 10, 1-12, 2015 | 86 | 2015 |
Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data S Lampa, M Dahlö, PI Olason, J Hagberg, O Spjuth Gigascience 2 (1), 2047-217X-2-9, 2013 | 84 | 2013 |
PhenoMeNal: processing and analysis of metabolomics data in the cloud K Peters, J Bradbury, S Bergmann, M Capuccini, M Cascante, P de Atauri, ... GigaScience 8 (2), giy149, 2019 | 72 | 2019 |
A confidence predictor for logD using conformal regression and a support-vector machine M Lapins, S Arvidsson, S Lampa, A Berg, W Schaal, J Alvarsson, O Spjuth Journal of cheminformatics 10, 1-10, 2018 | 54 | 2018 |
Large-scale ligand-based predictive modelling using support vector machines J Alvarsson, S Lampa, W Schaal, C Andersson, JES Wikberg, O Spjuth Journal of cheminformatics 8, 1-9, 2016 | 48 | 2016 |
SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines S Lampa, M Dahlö, J Alvarsson, O Spjuth GigaScience 8 (5), giz044, 2019 | 44 | 2019 |
Linking the resource description framework to cheminformatics and proteochemometrics EL Willighagen, J Alvarsson, A Andersson, M Eklund, S Lampa, M Lapins, ... Journal of Biomedical Semantics 2, 1-24, 2011 | 40 | 2011 |
Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles S Lampa, J Alvarsson, O Spjuth Journal of cheminformatics 8, 1-12, 2016 | 37 | 2016 |
Predicting off-target binding profiles with confidence using conformal prediction S Lampa, J Alvarsson, S Arvidsson Mc Shane, A Berg, E Ahlberg, ... Frontiers in pharmacology 9, 1256, 2018 | 35 | 2018 |
Software engineering for scientific big data analysis BA Grüning, S Lampa, M Vaudel, D Blankenberg GigaScience 8 (5), giz054, 2019 | 29 | 2019 |
Existing workflow systems. P Amstutz (No Title), 2021 | 17 | 2021 |
SWI-Prolog as a Semantic Web tool for semantic querying in Bioclipse: Integration and performance benchmarking S Lampa | 8 | 2010 |
RDFIO: extending Semantic MediaWiki for interoperable biomedical data management S Lampa, E Willighagen, P Kohonen, A King, D Vrandečić, R Grafström, ... Journal of biomedical semantics 8, 1-13, 2017 | 7 | 2017 |
Approaches for containerized scientific workflows in cloud environments with applications in life science O Spjuth, M Capuccini, M Carone, A Larsson, W Schaal, JA Novella, ... Preprints, 2020 | 6 | 2020 |
Existing workflow systems, 2021 P Amstutz, M Mikheev, MR Crusoe, N Tijanić, S Lampa Reference Source, 0 | 6 | |
UPPNEX-A solution for Next Generation Sequencing data management and analysis S Lampa, J Hagberg, O Spjuth EMBnet. journal 17 (B), 44, 2011 | 2 | 2011 |
Approaches for containerized scientific workflows in cloud environments with applications in life science O Spjuth, M Capuccini, M Carone, A Larsson, W Schaal, JA Novella, ... F1000Research 10, 513, 2021 | 1 | 2021 |
SciPipe—Turning Scientific Workflows into Computer Programs S Lampa, M Dahlö, J Alvarsson, O Spjuth Computing in Science & Engineering 21 (3), 109-113, 2019 | | 2019 |